海洋、河流与共生:深度分化的花叶目 Hildenbrandiales(红藻纲)的多样性、系统学、生物地理学和进化。

IF 3.6 1区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Phylogenetics and Evolution Pub Date : 2024-05-13 DOI:10.1016/j.ympev.2024.108106
Christophe Vieira , Cody M. Brooks , Shingo Akita , Myung Sook Kim , Gary W. Saunders
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引用次数: 0

摘要

红藻纲(Hildenbrandiales)是一个典型的沙色红藻目,是一个早期分化的花叶藻类,在不同温度带的海洋和淡水生态系统中具有全球意义。为了全面阐明该目藻的多样性、系统发育、生物地理学和进化,我们利用从近 700 个标本中获得的分子数据进行了全面的重新研究。通过物种划分方法,我们确定了 Hildenbrandiales 目中的物种进化单位(ESUs),旨在加强我们对物种多样性的理解,并首次为该目生成了时间校准树和祖先区域重建。线粒体 cox1 和叶绿体 rbcL 标记被用来推断物种边界,随后的系统发育重建涉及 cox1、rbcL 和 18S rDNA 的连接序列。系统发生树的时间校准使用了三叠纪一个据称是淡水的 Hildenbrandia 物种的化石记录和文献中的三个次要时间点。我们的物种划界分析发现了令人震惊的 97 个不同的 ESU,是该目已知多样性的五倍。我们的时间校准分析将 Hildenbrandiales 的起源(冠年龄)置于埃迪卡拉纪,淡水物种在二叠纪晚期至三叠纪早期作为单系群出现。系统发育重建确定了七个主要支系,它们在志留纪至石炭纪期间经历了早期分化。两个主要的进化事件--淡水栖息地的殖民化和与海洋真菌的强制性系统共生--标志着这个类群,导致其形态发生了显著变化,但物种多样性却没有相应增加。尽管新发现的物种多样性令人瞩目,但从跨越 8 亿多年的进化时间轴来看,现存类群的多样性似乎相对有限。这种限制可能源于有限的地理取样或无性繁殖的盛行。然而,物种丰富度估算和稀有度分析表明,还有更大的多样性有待发掘--可能比现在多四倍。这些发现极大地重塑了我们对深度分化的花叶纲物种多样性的认识,并为该纲的进化历史和生态适应性提供了宝贵的见解。在系统发生学、生态学和形态学证据的支持下,我们建立了新河属(Riverina gen. nov.这标志着我们朝着完善 Hildenbrandiales 目分类学迈出了第一步,这项工作需要进行彻底的修订,特别是要建立几个属来解决 Hildenbrandia 的多系地位问题。然而,有限的诊断特征带来了挑战,需要一种全新的方法来定义属。一个潜在的解决方案是采用分子系统学的观点,它可以精确划分分类学的界限。
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Of sea, rivers and symbiosis: Diversity, systematics, biogeography and evolution of the deeply diverging florideophycean order Hildenbrandiales (Rhodophyta)

The Hildenbrandiales, a typically saxicolous red algal order, is an early diverging florideophycean group with global significance in marine and freshwater ecosystems across diverse temperature zones. To comprehensively elucidate the diversity, phylogeny, biogeography, and evolution of this order, we conducted a thorough re-examination employing molecular data derived from nearly 700 specimens. Employing a species delimitation method, we identified Evolutionary Species Units (ESUs) within the Hildenbrandiales aiming to enhance our understanding of species diversity and generate the first time-calibrated tree and ancestral area reconstruction for this order. Mitochondrial cox1 and chloroplast rbcL markers were used to infer species boundaries, and subsequent phylogenetic reconstructions involved concatenated sequences of cox1, rbcL, and 18S rDNA. Time calibration of the resulting phylogenetic tree used a fossil record from a Triassic purportedly freshwater Hildenbrandia species and three secondary time points from the literature. Our species delimitation analysis revealed an astounding 97 distinct ESUs, quintupling the known diversity within this order. Our time-calibration analysis placed the origin of Hildenbrandiales (crown age) in the Ediacaran period, with freshwater species emerging as a monophyletic group during the later Permian to early Triassic. Phylogenetic reconstructions identified seven major clades, experiencing early diversification during the Silurian to Carboniferous period. Two major evolutionary events—colonization of freshwater habitats and obligate systemic symbiosis with a marine fungus—marked this order, leading to significant morphological alterations without a commensurate increase in species diversification. Despite the remarkable newly discovered diversity, the extant taxon diversity appears relatively constrained when viewed against an evolutionary timeline spanning over 800 million years. This limitation may stem from restricted geographic sampling or the prevalence of asexual reproduction. However, species richness estimation and rarefaction analyses suggest a substantially larger diversity yet to be uncovered—potentially four times greater. These findings drastically reshape our understanding of the deeply diverging florideophycean order Hildenbrandiales species diversity, and contribute valuable insights into this order's evolutionary history and ecological adaptations. Supported by phylogenetic, ecological and morphological evidence, we established the genus Riverina gen. nov. to accommodate freshwater species of Hildenbrandiales, which form a monophyletic clade in our analyses. This marks the first step toward refining the taxonomy of the Hildenbrandiales, an order demanding thorough revisions, notably with the creation of several genera to address the polyphyletic status of Hildenbrandia. However, the limited diagnostic features pose a challenge, necessitating a fresh approach to defining genera. A potential solution lies in embracing a molecular systematic perspective, which can offer precise delineations of taxonomic boundaries.

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来源期刊
Molecular Phylogenetics and Evolution
Molecular Phylogenetics and Evolution 生物-进化生物学
CiteScore
7.50
自引率
7.30%
发文量
249
审稿时长
7.5 months
期刊介绍: Molecular Phylogenetics and Evolution is dedicated to bringing Darwin''s dream within grasp - to "have fairly true genealogical trees of each great kingdom of Nature." The journal provides a forum for molecular studies that advance our understanding of phylogeny and evolution, further the development of phylogenetically more accurate taxonomic classifications, and ultimately bring a unified classification for all the ramifying lines of life. Phylogeographic studies will be considered for publication if they offer EXCEPTIONAL theoretical or empirical advances.
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