Sahaj A. Patel, Rachel June Smith, Abidin Yildirim
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In addition, the efficacy of GCFE is compared with two distinct visibility graphs and tested against seven other feature extraction methods. In the GCFE method, the features are extracted from a special modified weighted Laplacian matrix from the visibility graphs. This method was applied to classify three different types of neural spikes from one dataset, and to distinguish between seizure and non-seizure events in another. The application of GCFE resulted in superior performance when compared to seven other algorithms, achieving a positive average accuracy difference of 2.67% across all experimental datasets. This indicates that GCFE consistently outperformed the other methods in terms of accuracy. Furthermore, the GCFE method was more computationally-efficient than the other feature extraction techniques. The GCFE method can also be employed in real-time biomedical signal classification where the visibility graphs are utilized such as EKG signal classification.","PeriodicalId":12462,"journal":{"name":"Frontiers in Neuroinformatics","volume":null,"pages":null},"PeriodicalIF":2.5000,"publicationDate":"2024-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Gershgorin circle theorem-based feature extraction for biomedical signal analysis\",\"authors\":\"Sahaj A. Patel, Rachel June Smith, Abidin Yildirim\",\"doi\":\"10.3389/fninf.2024.1395916\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Recently, graph theory has become a promising tool for biomedical signal analysis, wherein the signals are transformed into a graph network and represented as either adjacency or Laplacian matrices. However, as the size of the time series increases, the dimensions of transformed matrices also expand, leading to a significant rise in computational demand for analysis. Therefore, there is a critical need for efficient feature extraction methods demanding low computational time. This paper introduces a new feature extraction technique based on the Gershgorin Circle theorem applied to biomedical signals, termed Gershgorin Circle Feature Extraction (GCFE). The study makes use of two publicly available datasets: one including synthetic neural recordings, and the other consisting of EEG seizure data. In addition, the efficacy of GCFE is compared with two distinct visibility graphs and tested against seven other feature extraction methods. In the GCFE method, the features are extracted from a special modified weighted Laplacian matrix from the visibility graphs. This method was applied to classify three different types of neural spikes from one dataset, and to distinguish between seizure and non-seizure events in another. The application of GCFE resulted in superior performance when compared to seven other algorithms, achieving a positive average accuracy difference of 2.67% across all experimental datasets. This indicates that GCFE consistently outperformed the other methods in terms of accuracy. Furthermore, the GCFE method was more computationally-efficient than the other feature extraction techniques. The GCFE method can also be employed in real-time biomedical signal classification where the visibility graphs are utilized such as EKG signal classification.\",\"PeriodicalId\":12462,\"journal\":{\"name\":\"Frontiers in Neuroinformatics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2024-05-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Frontiers in Neuroinformatics\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.3389/fninf.2024.1395916\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Neuroinformatics","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.3389/fninf.2024.1395916","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
Gershgorin circle theorem-based feature extraction for biomedical signal analysis
Recently, graph theory has become a promising tool for biomedical signal analysis, wherein the signals are transformed into a graph network and represented as either adjacency or Laplacian matrices. However, as the size of the time series increases, the dimensions of transformed matrices also expand, leading to a significant rise in computational demand for analysis. Therefore, there is a critical need for efficient feature extraction methods demanding low computational time. This paper introduces a new feature extraction technique based on the Gershgorin Circle theorem applied to biomedical signals, termed Gershgorin Circle Feature Extraction (GCFE). The study makes use of two publicly available datasets: one including synthetic neural recordings, and the other consisting of EEG seizure data. In addition, the efficacy of GCFE is compared with two distinct visibility graphs and tested against seven other feature extraction methods. In the GCFE method, the features are extracted from a special modified weighted Laplacian matrix from the visibility graphs. This method was applied to classify three different types of neural spikes from one dataset, and to distinguish between seizure and non-seizure events in another. The application of GCFE resulted in superior performance when compared to seven other algorithms, achieving a positive average accuracy difference of 2.67% across all experimental datasets. This indicates that GCFE consistently outperformed the other methods in terms of accuracy. Furthermore, the GCFE method was more computationally-efficient than the other feature extraction techniques. The GCFE method can also be employed in real-time biomedical signal classification where the visibility graphs are utilized such as EKG signal classification.
期刊介绍:
Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide.
Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states.
Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.