基于格什高林圆定理的生物医学信号分析特征提取

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Neuroinformatics Pub Date : 2024-05-16 DOI:10.3389/fninf.2024.1395916
Sahaj A. Patel, Rachel June Smith, Abidin Yildirim
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引用次数: 0

摘要

最近,图论已成为生物医学信号分析的一种前景广阔的工具,在图论中,信号被转换成图网络,并以邻接矩阵或拉普拉斯矩阵表示。然而,随着时间序列大小的增加,转换矩阵的维数也随之扩大,导致分析的计算需求大幅上升。因此,亟需要求低计算时间的高效特征提取方法。本文介绍了一种基于格什高林圆定理的新特征提取技术,并将其应用于生物医学信号,称为格什高林圆特征提取(GCFE)。研究利用了两个公开的数据集:一个包括合成神经记录,另一个包括脑电图发作数据。此外,GCFE 的功效还与两种不同的可见性图进行了比较,并与其他七种特征提取方法进行了测试。在 GCFE 方法中,特征是从可见性图中一个特殊的修正加权拉普拉斯矩阵中提取的。该方法被用于对一个数据集中的三种不同类型的神经尖峰进行分类,以及区分另一个数据集中的癫痫发作和非癫痫发作事件。与其他七种算法相比,GCFE 的应用取得了优异的性能,在所有实验数据集上的平均准确率相差 2.67%。这表明,GCFE 在准确性方面一直优于其他方法。此外,与其他特征提取技术相比,GCFE 方法的计算效率更高。GCFE 方法还可用于实时生物医学信号分类,如心电图信号分类,其中利用了可见性图。
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Gershgorin circle theorem-based feature extraction for biomedical signal analysis
Recently, graph theory has become a promising tool for biomedical signal analysis, wherein the signals are transformed into a graph network and represented as either adjacency or Laplacian matrices. However, as the size of the time series increases, the dimensions of transformed matrices also expand, leading to a significant rise in computational demand for analysis. Therefore, there is a critical need for efficient feature extraction methods demanding low computational time. This paper introduces a new feature extraction technique based on the Gershgorin Circle theorem applied to biomedical signals, termed Gershgorin Circle Feature Extraction (GCFE). The study makes use of two publicly available datasets: one including synthetic neural recordings, and the other consisting of EEG seizure data. In addition, the efficacy of GCFE is compared with two distinct visibility graphs and tested against seven other feature extraction methods. In the GCFE method, the features are extracted from a special modified weighted Laplacian matrix from the visibility graphs. This method was applied to classify three different types of neural spikes from one dataset, and to distinguish between seizure and non-seizure events in another. The application of GCFE resulted in superior performance when compared to seven other algorithms, achieving a positive average accuracy difference of 2.67% across all experimental datasets. This indicates that GCFE consistently outperformed the other methods in terms of accuracy. Furthermore, the GCFE method was more computationally-efficient than the other feature extraction techniques. The GCFE method can also be employed in real-time biomedical signal classification where the visibility graphs are utilized such as EKG signal classification.
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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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