基于云计算的无服务器计算可加速核医学成像的蒙特卡罗模拟。

IF 1.3 Q3 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Biomedical Physics & Engineering Express Pub Date : 2024-06-25 DOI:10.1088/2057-1976/ad5847
Reimund Bayerlein, Vivek Swarnakar, Aaron Selfridge, Benjamin A Spencer, Lorenzo Nardo, Ramsey D Badawi
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引用次数: 0

摘要

本研究探讨了基于云的无服务器计算在加速核医学成像任务的蒙特卡罗(MC)模拟方面的潜力。即使在现代多核计算服务器上执行,MC 模拟也会带来很高的计算负担。 我们在科学文献中首次使用亚马逊网络服务(AWS)Lambda无服务器计算平台研究了基于云计算的正电子发射断层成像放射性衰变无服务器MC模拟的计算性能。我们通过测量使用 10^5 到 2∙10^10 个模拟衰变的进程的执行时间,比较了 AWS 与现代内部多线程重建服务器的计算性能。我们在 AWS 计算环境中部署了两个流行的 MC 仿真框架--SimSET 和 GATE。容器化应用图像被用作 AWS Lambda 函数的基础,本地(非云)脚本被用来协调模拟的部署。任务被分解成更小的并行运行,并在并发运行的 AWS Lambda 实例上启动,结果通过简单存储服务进行后处理和下载。然而,GATE 实现会产生越来越大的输出文件大小,这表明互联网连接速度可能成为数据传输的主要瓶颈。使用SimSET模拟109种衰变只需5分钟,在AWS上的计算成本约为10美元,而GATE则需要分批运行100分钟以上,成本要高得多。
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Cloud-based serverless computing enables accelerated monte carlo simulations for nuclear medicine imaging.

Objective.This study investigates the potential of cloud-based serverless computing to accelerate Monte Carlo (MC) simulations for nuclear medicine imaging tasks. MC simulations can pose a high computational burden-even when executed on modern multi-core computing servers. Cloud computing allows simulation tasks to be highly parallelized and considerably accelerated.Approach.We investigate the computational performance of a cloud-based serverless MC simulation of radioactive decays for positron emission tomography imaging using Amazon Web Service (AWS) Lambda serverless computing platform for the first time in scientific literature. We provide a comparison of the computational performance of AWS to a modern on-premises multi-thread reconstruction server by measuring the execution times of the processes using between105and2·1010simulated decays. We deployed two popular MC simulation frameworks-SimSET and GATE-within the AWS computing environment. Containerized application images were used as a basis for an AWS Lambda function, and local (non-cloud) scripts were used to orchestrate the deployment of simulations. The task was broken down into smaller parallel runs, and launched on concurrently running AWS Lambda instances, and the results were postprocessed and downloaded via the Simple Storage Service.Main results.Our implementation of cloud-based MC simulations with SimSET outperforms local server-based computations by more than an order of magnitude. However, the GATE implementation creates more and larger output file sizes and reveals that the internet connection speed can become the primary bottleneck for data transfers. Simulating 109decays using SimSET is possible within 5 min and accrues computation costs of about $10 on AWS, whereas GATE would have to run in batches for more than 100 min at considerably higher costs.Significance.Adopting cloud-based serverless computing architecture in medical imaging research facilities can considerably improve processing times and overall workflow efficiency, with future research exploring additional enhancements through optimized configurations and computational methods.

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来源期刊
Biomedical Physics & Engineering Express
Biomedical Physics & Engineering Express RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING-
CiteScore
2.80
自引率
0.00%
发文量
153
期刊介绍: BPEX is an inclusive, international, multidisciplinary journal devoted to publishing new research on any application of physics and/or engineering in medicine and/or biology. Characterized by a broad geographical coverage and a fast-track peer-review process, relevant topics include all aspects of biophysics, medical physics and biomedical engineering. Papers that are almost entirely clinical or biological in their focus are not suitable. The journal has an emphasis on publishing interdisciplinary work and bringing research fields together, encompassing experimental, theoretical and computational work.
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