{"title":"climetrics:量化气候变化多个方面的 R 软件包","authors":"Shirin Taheri, Babak Naimi, Miguel B. Araújo","doi":"10.1111/ecog.07176","DOIUrl":null,"url":null,"abstract":"<p>Climate change affects biodiversity in a variety of ways, necessitating the exploration of multiple climate dimensions using appropriate metrics. Despite the existence of several climate change metrics tools for comparing alternative climate change metrics on the same footing are lacking. To address this gap, we developed ‘climetrics' which is an extensible and reproducible R package to spatially quantify and explore multiple dimensions of climate change through a unified procedure. Six widely used climate change metrics are implemented, including 1) standardized local anomalies; 2) changes in probabilities of local climate extremes; 3) changes in areas of analogous climates; 4) novel climates; 5) changes in distances to analogous climates; and 6) climate change velocity. For climate change velocity, three different algorithms are implemented in the package including; 1) distanced-based velocity (‘<i>dVe</i>'); 2) threshold-based velocity (‘<i>ve</i>'); and 3) gradient-based velocity (‘<i>gVe</i>'). The package also provides additional tools to calculate the monthly mean of climate variables over multiple years, to quantify and map the temporal trend (slope) of a given climate variable at the pixel level, and to classify and map Köppen-Geiger (KG) climate zones. The 'climetrics' R package is integrated with the 'rts' package for efficient handling of raster time-series data. The functions in 'climetrics' are designed to be user-friendly, making them suitable for less-experienced R users. Detailed descriptions in help pages and vignettes of the package facilitate further customization by advanced users. In summary, the 'climetrics' R package offers a unified framework for quantifying various climate change metrics, making it a useful tool for characterizing multiple dimensions of climate change and exploring their spatiotemporal patterns.</p>","PeriodicalId":51026,"journal":{"name":"Ecography","volume":"2024 8","pages":""},"PeriodicalIF":5.4000,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/ecog.07176","citationCount":"0","resultStr":"{\"title\":\"climetrics: an R package to quantify multiple dimensions of climate change\",\"authors\":\"Shirin Taheri, Babak Naimi, Miguel B. Araújo\",\"doi\":\"10.1111/ecog.07176\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Climate change affects biodiversity in a variety of ways, necessitating the exploration of multiple climate dimensions using appropriate metrics. 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The package also provides additional tools to calculate the monthly mean of climate variables over multiple years, to quantify and map the temporal trend (slope) of a given climate variable at the pixel level, and to classify and map Köppen-Geiger (KG) climate zones. The 'climetrics' R package is integrated with the 'rts' package for efficient handling of raster time-series data. The functions in 'climetrics' are designed to be user-friendly, making them suitable for less-experienced R users. Detailed descriptions in help pages and vignettes of the package facilitate further customization by advanced users. 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引用次数: 0
摘要
气候变化以多种方式影响生物多样性,因此有必要使用适当的衡量标准对多个气候维度进行探索。尽管存在多种气候变化度量工具,但仍缺乏在相同基础上比较其他气候变化度量的工具。为了弥补这一不足,我们开发了 "climetrics",它是一个可扩展、可重复的 R 软件包,通过统一的程序对气候变化的多个维度进行空间量化和探索。它采用了六种广泛使用的气候变化指标,包括:1)标准化局部异常;2)局部极端气候概率的变化;3)类似气候区域的变化;4)新气候;5)到类似气候区域的距离变化;以及 6)气候变化速度。在气候变化速度方面,软件包采用了三种不同的算法,包括:1)基于距离的速度('dVe');2)基于阈值的速度('ve');3)基于梯度的速度('gVe')。该软件包还提供了其他工具,用于计算多年气候变量的月平均值,量化和绘制给定气候变量在像素级的时间趋势(斜率),以及划分和绘制柯本-盖革(KG)气候区。climetrics "R 软件包与 "rts "软件包集成,可有效处理栅格时间序列数据。climetrics "中的函数设计得非常人性化,适合经验不足的 R 用户使用。帮助页面和软件包小节中的详细说明便于高级用户进一步定制。总之,"climetrics "R 软件包为量化各种气候变化指标提供了一个统一的框架,使其成为描述气候变化的多个维度并探索其时空模式的有用工具。
climetrics: an R package to quantify multiple dimensions of climate change
Climate change affects biodiversity in a variety of ways, necessitating the exploration of multiple climate dimensions using appropriate metrics. Despite the existence of several climate change metrics tools for comparing alternative climate change metrics on the same footing are lacking. To address this gap, we developed ‘climetrics' which is an extensible and reproducible R package to spatially quantify and explore multiple dimensions of climate change through a unified procedure. Six widely used climate change metrics are implemented, including 1) standardized local anomalies; 2) changes in probabilities of local climate extremes; 3) changes in areas of analogous climates; 4) novel climates; 5) changes in distances to analogous climates; and 6) climate change velocity. For climate change velocity, three different algorithms are implemented in the package including; 1) distanced-based velocity (‘dVe'); 2) threshold-based velocity (‘ve'); and 3) gradient-based velocity (‘gVe'). The package also provides additional tools to calculate the monthly mean of climate variables over multiple years, to quantify and map the temporal trend (slope) of a given climate variable at the pixel level, and to classify and map Köppen-Geiger (KG) climate zones. The 'climetrics' R package is integrated with the 'rts' package for efficient handling of raster time-series data. The functions in 'climetrics' are designed to be user-friendly, making them suitable for less-experienced R users. Detailed descriptions in help pages and vignettes of the package facilitate further customization by advanced users. In summary, the 'climetrics' R package offers a unified framework for quantifying various climate change metrics, making it a useful tool for characterizing multiple dimensions of climate change and exploring their spatiotemporal patterns.
期刊介绍:
ECOGRAPHY publishes exciting, novel, and important articles that significantly advance understanding of ecological or biodiversity patterns in space or time. Papers focusing on conservation or restoration are welcomed, provided they are anchored in ecological theory and convey a general message that goes beyond a single case study. We encourage papers that seek advancing the field through the development and testing of theory or methodology, or by proposing new tools for analysis or interpretation of ecological phenomena. Manuscripts are expected to address general principles in ecology, though they may do so using a specific model system if they adequately frame the problem relative to a generalized ecological question or problem.
Purely descriptive papers are considered only if breaking new ground and/or describing patterns seldom explored. Studies focused on a single species or single location are generally discouraged unless they make a significant contribution to advancing general theory or understanding of biodiversity patterns and processes. Manuscripts merely confirming or marginally extending results of previous work are unlikely to be considered in Ecography.
Papers are judged by virtue of their originality, appeal to general interest, and their contribution to new developments in studies of spatial and temporal ecological patterns. There are no biases with regard to taxon, biome, or biogeographical area.