Han Zhang, Shuo Jiao, Yi Xing, Bo Jiang, Shungui Zhou, Baogang Zhang
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The null model reveals that V induces homogeneous selection, shaping co-occurrence patterns and leading to increased number of positive associations, particularly with keystone genera such as <i>f_Gemmatimonadaceae</i>, <i>Nocardioides</i>, <i>Micromonospora</i>, and <i>Rubrobacter</i> under higher V concentrations (>559.6 mg/kg). Moreover, a metagenomic analysis yields 67 metagenome-assembled genomes, unraveling the potential metabolic pathways of keystone taxa and their likely involvement in the V(V) reduction process. 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引用次数: 0
摘要
在钒(V)冶炼厂的土壤中,各种微生物依靠新陈代谢活动在压力下生存。然而,钒矿开采环境中土壤微生物群的特征和功能仍未在大陆范围内得到探索。本研究深入研究了中国 90 个V型冶炼厂土壤微生物组的微生物多样性、群落组合和功能潜力。结果表明,α多样性沿V梯度明显降低,V是影响群落结构的主要因素,其次是其他环境、气候和地理因素。空模型显示,在较高的 V 浓度(559.6 毫克/千克)下,V 诱导了同质选择,塑造了共生模式,并导致正关联的数量增加,特别是与 f_Gemmatimonadaceae、Nocardioides、Micromonospora 和 Rubrobacter 等基石菌属的关联。此外,元基因组分析得出了 67 个元基因组,揭示了关键类群的潜在代谢途径及其可能参与的 V(V)还原过程。发现硝酸盐和亚硝酸盐还原酶(nirK、narG)和 mtrABC 在分类学上隶属于小孢子菌(Micromonospora. sp)、FEN-1250.此外,反向柠檬酸循环(rTCA)很可能是主要的碳固定途径,为假定的 V 还原酶合成替代能源,突出了支持微生物生存的自养和异养过程之间潜在的协同关系。我们的研究结果全面揭示了V胁迫下土壤群落变化背后的驱动力,揭示了本地微生物可能采用的减轻V影响的有力策略。
Unveiling Soil Microbiome Adaptation and Survival Strategy Under Vanadium Stress in Nationwide Mining Environments
In the soils of vanadium (V) smelters, a diverse array of microorganisms relies on metabolic activities for survival amid stress. However, the characteristics and functions of soil microbiomes in V mining environments remain unexplored on a continental scale. This study thoroughly investigates the microbial diversity, community assembly, and functional potential of soil microbiome across 90 V smelters in China. Alpha diversity decreases significantly along the V gradient, with V emerging as the primary factor influencing community structure, followed by other environmental, climatic, and geographic factors. The null model reveals that V induces homogeneous selection, shaping co-occurrence patterns and leading to increased number of positive associations, particularly with keystone genera such as f_Gemmatimonadaceae, Nocardioides, Micromonospora, and Rubrobacter under higher V concentrations (>559.6 mg/kg). Moreover, a metagenomic analysis yields 67 metagenome-assembled genomes, unraveling the potential metabolic pathways of keystone taxa and their likely involvement in the V(V) reduction process. Nitrate and nitrite reductase (nirK, narG), and mtrABC are found to be taxonomically affiliated with Micromonospora. sp, FEN-1250. sp, Nocardioides. sp, etc. Additionally, the reverse citric acid cycle (rTCA) likely serves as the primary carbon fixation pathway, synthesizing alternative energy for putative V reducers, highlighting a potentially synergistic relationship between autotrophic and heterotrophic processes that supports microbial survival. Our findings comprehensively uncover the driving forces behind soil community variation under V stress, revealing robust strategies possibly employed by indigenous microorganisms to mitigate the impact of V. These insights hold potential for applications in bioremediation.
期刊介绍:
JGR-Biogeosciences focuses on biogeosciences of the Earth system in the past, present, and future and the extension of this research to planetary studies. The emerging field of biogeosciences spans the intellectual interface between biology and the geosciences and attempts to understand the functions of the Earth system across multiple spatial and temporal scales. Studies in biogeosciences may use multiple lines of evidence drawn from diverse fields to gain a holistic understanding of terrestrial, freshwater, and marine ecosystems and extreme environments. Specific topics within the scope of the section include process-based theoretical, experimental, and field studies of biogeochemistry, biogeophysics, atmosphere-, land-, and ocean-ecosystem interactions, biomineralization, life in extreme environments, astrobiology, microbial processes, geomicrobiology, and evolutionary geobiology