Srijana Dasgupta, Shijun Gao, Haozhe Yang, Marc M Greenberg, Ashis K Basu
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The types of mutations from 8-OxodGuo were targeted G → T transversion, whereas Fapy•dG predominantly gave G → T and G deletion. 5'-8-OxodGuo-5-fdU also gave exclusively G → T mutation, which was 3-fold and 11-fold greater, without and with SOS induction, respectively, compared to that of an isolated 8-OxodGuo. In <i>mutY/mutM</i> cells, the MF of 8-OxodGuo and 5'-8-OxodGuo-5-fdU increased 13-fold and 7-fold, respectively. The MF of 5'-8-OxodGuo-5-fdU increased 2-fold and 3-fold in Pol II- and Pol IV-deficient cells, respectively, suggesting that these polymerases carry out largely error-free bypass. The MF of 5'- Fapy•dG-5-fdU was similar without (13 ± 1%) and with (16 ± 2%) SOS induction. Unlike the complex mutation spectrum reported earlier in human cells for 5'- Fapy•dG-5-fdU, with G → T as the major type of errors, in <i>E. coli</i>, the mutations were predominantly from deletion of 5-fdU. We postulate that removal of adenine-incorporated opposite 8-OxodGuo by Fpg and MutY repair proteins is partially impaired in the tandem 5'-8-OxodGuo-5-fdU, resulting in an increase in the G → T mutations, whereas a slippage mechanism may be operating in the 5'- Fapy•dG-5-fdU mutagenesis. This study showed that not only are these tandem lesions more mutagenic than the isolated lesions but they may also exhibit different types of mutations in different organisms.</p>","PeriodicalId":3,"journal":{"name":"ACS Applied Electronic Materials","volume":null,"pages":null},"PeriodicalIF":4.3000,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11333159/pdf/","citationCount":"0","resultStr":"{\"title\":\"8-OxodGuo and Fapy•dG Mutagenicity in <i>Escherichia coli</i> Increases Significantly when They Are Part of a Tandem Lesion with 5-Formyl-2'-deoxyuridine.\",\"authors\":\"Srijana Dasgupta, Shijun Gao, Haozhe Yang, Marc M Greenberg, Ashis K Basu\",\"doi\":\"10.1021/acs.chemrestox.4c00231\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Tandem lesions, which are defined by two or more contiguously damaged nucleotides, are a hallmark of ionizing radiation. Recently, tandem lesions containing 5-formyl-2'-deoxyuridine (5-fdU) flanked by a 5'-8-OxodGuo or Fapy•dG were discovered, and they are more mutagenic in human cells than the isolated lesions. In the current study, we examined replication of these tandem lesions in <i>Escherichia coli</i>. Bypass efficiency of both tandem lesions was reduced by 30-40% compared to the isolated lesions. Mutation frequencies (MFs) of isolated 8-OxodGuo and Fapy•dG were low, and no mutants were isolated from replication of a 5-fdU construct. The types of mutations from 8-OxodGuo were targeted G → T transversion, whereas Fapy•dG predominantly gave G → T and G deletion. 5'-8-OxodGuo-5-fdU also gave exclusively G → T mutation, which was 3-fold and 11-fold greater, without and with SOS induction, respectively, compared to that of an isolated 8-OxodGuo. In <i>mutY/mutM</i> cells, the MF of 8-OxodGuo and 5'-8-OxodGuo-5-fdU increased 13-fold and 7-fold, respectively. The MF of 5'-8-OxodGuo-5-fdU increased 2-fold and 3-fold in Pol II- and Pol IV-deficient cells, respectively, suggesting that these polymerases carry out largely error-free bypass. The MF of 5'- Fapy•dG-5-fdU was similar without (13 ± 1%) and with (16 ± 2%) SOS induction. Unlike the complex mutation spectrum reported earlier in human cells for 5'- Fapy•dG-5-fdU, with G → T as the major type of errors, in <i>E. coli</i>, the mutations were predominantly from deletion of 5-fdU. We postulate that removal of adenine-incorporated opposite 8-OxodGuo by Fpg and MutY repair proteins is partially impaired in the tandem 5'-8-OxodGuo-5-fdU, resulting in an increase in the G → T mutations, whereas a slippage mechanism may be operating in the 5'- Fapy•dG-5-fdU mutagenesis. 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引用次数: 0
摘要
串联病变由两个或两个以上连续受损的核苷酸构成,是电离辐射的一个特征。最近,人们发现了含有 5-甲酰基-2'-脱氧尿苷(5-fdU)和 5'-8-OxodGuo 或 Fapy-dG 的串联病变,它们在人体细胞中的致突变性比孤立的病变更强。在本研究中,我们考察了这些串联病变在大肠杆菌中的复制情况。与孤立病变相比,这两种串联病变的旁路效率降低了 30-40%。分离出的 8-OxodGuo 和 Fapy-dG 的突变频率(MFs)很低,复制 5-fdU 构建体时也没有分离出突变体。8-OxodGuo 的突变类型是有针对性的 G → T 转换,而 Fapy-dG 则主要是 G → T 和 G 缺失。5'-8-OxodGuo-5-fdU 也只产生 G → T 突变,与分离的 8-OxodGuo 相比,在没有 SOS 诱导和有 SOS 诱导的情况下,G → T 突变分别增加了 3 倍和 11 倍。在 mutY/mutM 细胞中,8-OxodGuo 和 5'-8-OxodGuo-5-fdU 的 MF 分别增加了 13 倍和 7 倍。在 Pol II 和 Pol IV 缺乏的细胞中,5'-8-OxodGuo-5-fdU 的 MF 分别增加了 2 倍和 3 倍,这表明这些聚合酶在很大程度上进行了无差错旁路。5'- Fapy-dG-5-fdU 的 MF 在没有(13 ± 1%)和有(16 ± 2%)SOS 诱导的情况下相似。与早先报告的 5'- Fapy-dG-5-fdU 在人体细胞中的复杂突变谱(G → T 为主要错误类型)不同,在大肠杆菌中,突变主要来自 5-fdU 的缺失。我们推测,在串联的 5'-8-OxodGuo-5-fdU 中,Fpg 和 MutY 修复蛋白去除腺嘌呤掺入的反向 8-OxodGuo 的能力部分受损,导致 G → T 突变增加,而在 5'- Fapy-dG-5-fdU 诱变中可能存在滑动机制。这项研究表明,这些串联病变不仅比孤立病变具有更强的诱变性,而且在不同生物体中还可能表现出不同类型的突变。
8-OxodGuo and Fapy•dG Mutagenicity in Escherichia coli Increases Significantly when They Are Part of a Tandem Lesion with 5-Formyl-2'-deoxyuridine.
Tandem lesions, which are defined by two or more contiguously damaged nucleotides, are a hallmark of ionizing radiation. Recently, tandem lesions containing 5-formyl-2'-deoxyuridine (5-fdU) flanked by a 5'-8-OxodGuo or Fapy•dG were discovered, and they are more mutagenic in human cells than the isolated lesions. In the current study, we examined replication of these tandem lesions in Escherichia coli. Bypass efficiency of both tandem lesions was reduced by 30-40% compared to the isolated lesions. Mutation frequencies (MFs) of isolated 8-OxodGuo and Fapy•dG were low, and no mutants were isolated from replication of a 5-fdU construct. The types of mutations from 8-OxodGuo were targeted G → T transversion, whereas Fapy•dG predominantly gave G → T and G deletion. 5'-8-OxodGuo-5-fdU also gave exclusively G → T mutation, which was 3-fold and 11-fold greater, without and with SOS induction, respectively, compared to that of an isolated 8-OxodGuo. In mutY/mutM cells, the MF of 8-OxodGuo and 5'-8-OxodGuo-5-fdU increased 13-fold and 7-fold, respectively. The MF of 5'-8-OxodGuo-5-fdU increased 2-fold and 3-fold in Pol II- and Pol IV-deficient cells, respectively, suggesting that these polymerases carry out largely error-free bypass. The MF of 5'- Fapy•dG-5-fdU was similar without (13 ± 1%) and with (16 ± 2%) SOS induction. Unlike the complex mutation spectrum reported earlier in human cells for 5'- Fapy•dG-5-fdU, with G → T as the major type of errors, in E. coli, the mutations were predominantly from deletion of 5-fdU. We postulate that removal of adenine-incorporated opposite 8-OxodGuo by Fpg and MutY repair proteins is partially impaired in the tandem 5'-8-OxodGuo-5-fdU, resulting in an increase in the G → T mutations, whereas a slippage mechanism may be operating in the 5'- Fapy•dG-5-fdU mutagenesis. This study showed that not only are these tandem lesions more mutagenic than the isolated lesions but they may also exhibit different types of mutations in different organisms.