合理设计二硫键以提高 Rhodococcus opacus 儿茶酚 1,2 二氧合酶的耐热性。

IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Biotechnology and Bioengineering Pub Date : 2024-08-01 DOI:10.1002/bit.28808
Joshua G. R. Lister, Matthew E. Loewen, Michele C. Loewen, Antony D. St-Jacques
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引用次数: 0

摘要

儿茶酚 1,2 二氧化酶是一种多功能酶,具有多种潜在用途。然而,由于其热稳定性较低,其工业潜力尚未得到发挥。在这项研究中,通过在 Rhodococcus opacus 物种的结构中引入二硫键,提高了该物种的嗜中性儿茶酚 1,2 二氧化酶的耐热性。利用计算预测应用软件获得了工程设计(56 个),并通过一组假设的选择标准将名单缩小到 9 个。经过重组生产和纯化,其中几种设计大大提高了蛋白质的热稳定性。值得注意的是,与野生型相比,变体 K96C-D278C 的改进包括 T50 增加了 4.6°C,半衰期增加了 725%,Tm 增加了 5.5°C,总周转次数增加了 10 倍以上。最佳设计的叠加并不奏效。总的来说,目前最先进的预测算法对设计二硫醚稳定的儿茶酚 1,2 二氧化酶是有效的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Rational design of disulfide bonds to increase thermostability of Rhodococcus opacus catechol 1,2 dioxygenase

Catechol 1,2 dioxygenase is a versatile enzyme with several potential applications. However, due to its low thermostability, its industrial potential is not being met. In this study, the thermostability of a mesophilic catechol 1,2 dioxygenase from the species Rhodococcus opacus was enhanced via the introduction of disulphide bonds into its structure. Engineered designs (56) were obtained using computational prediction applications, with a set of hypothesized selection criteria narrowing the list to 9. Following recombinant production and purification, several of the designs demonstrated substantially improved protein thermostability. Notably, variant K96C-D278C yielded improvements including a 4.6°C increase in T50, a 725% increase in half-life, a 5.5°C increase in Tm, and a >10-fold increase in total turnover number compared to wild type. Stacking of best designs was not productive. Overall, current state-of-the-art prediction algorithms were effective for design of disulfide-thermostabilized catechol 1,2 dioxygenase.

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来源期刊
Biotechnology and Bioengineering
Biotechnology and Bioengineering 工程技术-生物工程与应用微生物
CiteScore
7.90
自引率
5.30%
发文量
280
审稿时长
2.1 months
期刊介绍: Biotechnology & Bioengineering publishes Perspectives, Articles, Reviews, Mini-Reviews, and Communications to the Editor that embrace all aspects of biotechnology. These include: -Enzyme systems and their applications, including enzyme reactors, purification, and applied aspects of protein engineering -Animal-cell biotechnology, including media development -Applied aspects of cellular physiology, metabolism, and energetics -Biocatalysis and applied enzymology, including enzyme reactors, protein engineering, and nanobiotechnology -Biothermodynamics -Biofuels, including biomass and renewable resource engineering -Biomaterials, including delivery systems and materials for tissue engineering -Bioprocess engineering, including kinetics and modeling of biological systems, transport phenomena in bioreactors, bioreactor design, monitoring, and control -Biosensors and instrumentation -Computational and systems biology, including bioinformatics and genomic/proteomic studies -Environmental biotechnology, including biofilms, algal systems, and bioremediation -Metabolic and cellular engineering -Plant-cell biotechnology -Spectroscopic and other analytical techniques for biotechnological applications -Synthetic biology -Tissue engineering, stem-cell bioengineering, regenerative medicine, gene therapy and delivery systems The editors will consider papers for publication based on novelty, their immediate or future impact on biotechnological processes, and their contribution to the advancement of biochemical engineering science. Submission of papers dealing with routine aspects of bioprocessing, description of established equipment, and routine applications of established methodologies (e.g., control strategies, modeling, experimental methods) is discouraged. Theoretical papers will be judged based on the novelty of the approach and their potential impact, or on their novel capability to predict and elucidate experimental observations.
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