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Expression of Viral DNA Polymerase in Synthetic Recombinant Adeno‐Associated Virus Producer Cell Line Enhances Full Particle Productivity 在合成重组腺相关病毒生产细胞系中表达病毒 DNA 聚合酶可提高全粒子生产率
IF 3.8 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-23 DOI: 10.1002/bit.28885
Yu‐Chieh Lin, Han‐Jung Kuo, Min Lu, Carissa Rungkittikhun, Wei‐Shou Hu
Recombinant adeno‐associated virus (rAAV) is a widely used viral vector in gene therapy. To meet the growing clinical demand, a scalable production technology which can efficiently produce high‐quality products is required. We have developed a synthetic biology strategy to generate HEK293‐based cell lines which have integrated essential AAV and adenoviral helper genes and are capable of producing rAAV upon induction. One such cell line, GX6B, produced up to 106 capsids per cell, but only a much lower level of rAAV genomes. The low AAV genome titer limited its rAAV productivity and increased empty viral particle content. To boost AAV genome amplification, the coding sequence of the DNA polymerase complex (UL30/UL42) from helper Herpes Simplex Virus type 1 (HSV‐1) was placed under an inducible promoter control and integrated into GX6B genome at a relatively low level. The resulting clones produced significantly higher titer of viral genomes, while their capsid level was unaffected. As a result, the encapsidated rAAV2 titer and the full particle content were significantly increased. We further demonstrated that this strategy of expressing HSV‐1 DNA polymerase to increase full particle productivity could be implemented in a synthetic cell line producing another serotype rAAV8.
重组腺相关病毒(rAAV)是一种广泛应用于基因治疗的病毒载体。为满足日益增长的临床需求,需要一种能高效生产高质量产品的可扩展生产技术。我们开发了一种合成生物学策略,生成了基于 HEK293 的细胞系,这些细胞系整合了重要的 AAV 和腺病毒辅助基因,能够在诱导下生产 rAAV。其中一种细胞系 GX6B 每个细胞可产生多达 106 个包囊,但 rAAV 基因组的水平却低得多。较低的 AAV 基因组滴度限制了其 rAAV 生产率,并增加了空病毒粒子的含量。为了提高 AAV 基因组的扩增能力,将辅助型单纯疱疹病毒 1 型(HSV-1)的 DNA 聚合酶复合体(UL30/UL42)编码序列置于诱导型启动子控制之下,并以相对较低的水平整合到 GX6B 基因组中。结果克隆产生的病毒基因组滴度明显更高,而其包囊水平却不受影响。因此,有包囊的 rAAV2 滴度和全颗粒含量都显著增加。我们进一步证明,这种表达 HSV-1 DNA 聚合酶以提高全颗粒生产率的策略可以在生产另一种血清型 rAAV8 的合成细胞系中实施。
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引用次数: 0
Advances in Artificially Designed Antibacterial Active Antimicrobial Peptides. 人工设计抗菌活性抗菌肽的进展。
IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-22 DOI: 10.1002/bit.28886
Ying Guo, Muhammad Haris Raza Farhan, Fei Gan, Xiaohan Yang, Yuxin Li, Lingli Huang, Xu Wang, Guyue Cheng

Antibacterial resistance has emerged as a significant global concern, necessitating the urgent development of new antibacterial drugs. Antimicrobial peptides (AMPs) are naturally occurring peptides found in various organisms. Coupled with a wide range of antibacterial activity, AMPs are less likely to develop drug resistance and can act as potential agents for treating bacterial infections. However, their characteristics, such as low activity, instability, and toxicity, hinder their clinical application. Consequently, researchers are inclined towards artificial design and optimization based on natural AMPs. This review discusses the research advancements in the field of artificial designing and optimization of various AMPs. Moreover, it highlights various strategies for designing such peptides, aiming to provide valuable insights for developing novel AMPs.

抗菌药耐药性已成为全球关注的一个重要问题,因此迫切需要开发新的抗菌药。抗菌肽(AMPs)是存在于各种生物体内的天然肽。AMPs 具有广泛的抗菌活性,不易产生耐药性,可作为治疗细菌感染的潜在药物。然而,AMPs 的低活性、不稳定性和毒性等特点阻碍了它们在临床上的应用。因此,研究人员倾向于基于天然 AMPs 进行人工设计和优化。本综述讨论了人工设计和优化各种 AMPs 领域的研究进展。此外,它还重点介绍了设计此类多肽的各种策略,旨在为开发新型 AMPs 提供有价值的见解。
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引用次数: 0
Streamlined Clarification and Capture Process for Monoclonal Antibodies Using Fluidized Bed Centrifugation and Multi-Column Chromatography With Membrane Adsorbers. 使用流化床离心法和带膜吸附器的多柱色谱法简化单克隆抗体的澄清和捕获过程。
IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-18 DOI: 10.1002/bit.28884
Fabian Schmitz, Martin Saballus, Thomas Kruse, Mirjana Minceva, Markus Kampmann

Harmonizing unit operations in the downstream process of monoclonal antibodies (mAbs) has a high potential to overcome throughput limitations and reduce manufacturing costs. This study proposes a streamlined clarification and capture (S-CC) process concept for the continuous processing of cell broth harvested from a connected bioreactor. The process was realized with a fluidized bed centrifuge connected to depth and sterile filters, a surge tank, and a multi-column chromatography (MCC) unit. The MCC unit was operated in the rapid cycling simulated moving bed (RC-BioSMB) mode with five convective diffusive membrane adsorbers (MAs). A control strategy and the surge tank were used to adjust the loading flow rate of the MCC unit. The mAb was recovered with a total process yield of 90%, with high removal of the process-related impurities HCP (2.1 LRV) and DNA (2.9 LRV). Moreover, the S-CC process productivity of 4.2 g h- 1 was up to 5.3 times higher than for comparable, hypothetical batch MA processes. In addition, the buffer consumption of the capture step could be reduced from 2.0 L g- 1 in batch mode to 1.2 L g- 1 in the RC-BioSMB mode. These results demonstrate the high potential of streamlined interconnected unit operations to improve the overall mAb downstream process performance.

协调单克隆抗体(mAbs)下游工艺中的单元操作,很有可能克服产量限制并降低生产成本。本研究提出了一种简化的澄清和捕获(S-CC)工艺概念,用于连续处理从连接的生物反应器中收集的细胞液。该工艺采用流化床离心机与深度和无菌过滤器、缓冲罐和多柱色谱(MCC)装置相连接。MCC 单元在快速循环模拟移动床(RC-BioSMB)模式下运行,配有五个对流扩散膜吸附器(MAs)。控制策略和缓冲罐用于调节 MCC 单元的加载流速。mAb 的总工艺回收率为 90%,与工艺相关的杂质 HCP(2.1 LRV)和 DNA(2.9 LRV)的去除率也很高。此外,S-CC 工艺的生产率为 4.2 克/小时-1,比可比的假定批量 MA 工艺高出 5.3 倍。此外,在 RC-BioSMB 模式下,捕集步骤的缓冲液消耗量可从间歇模式的 2.0 升/克-1 减少到 1.2 升/克-1。这些结果表明,精简的互联单元操作在改善整个 mAb 下游工艺性能方面具有很大的潜力。
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引用次数: 0
Regeneration of Spent Culture Media for Sustainable and Continuous mAb Production via Ion Concentration Polarization. 通过离子浓度极化再生废培养基,实现可持续和连续的 mAb 生产。
IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-18 DOI: 10.1002/bit.28888
Eric Wynne, Junghyo Yoon, Dohyun Park, Mingyang Cui, Caitlin Morris, Jaeweon Lee, Zhao Wang, Seongkyu Yoon, Jongyoon Han

In modern bioprocessing, cell culture media is one of the most significant cost drivers, yet the nutrients and other critical factors in the media are often not fully utilized. With the renewed emphasis on reducing the cost of bioprocessing, there is much interest in reducing the overall use of cell culture media. In this work, we introduce a mesoscale microfluidic separation device based on the ion concentration polarization (ICP) process to regenerate the spent media for reuse by removing critical waste products from the cell culture that are known to inhibit the growth of the cells. We demonstrated that up to 75% of spent culture media can be regenerated and reused without affecting the cell viability. A detailed analysis of the materials consumed during antibody production indicated that one could improve the water process mass intensity by up to 33% by regenerating and recycling the media. Given that ICP separation systems have already been scaled up to support large-volume processing, it would be feasible to deploy this technology for manufacturing scale bioreactors (e.g., 50 L perfusion culture of CHO cells), reducing the overall operation cost and water use.

在现代生物处理过程中,细胞培养基是最重要的成本驱动因素之一,但培养基中的营养物质和其他关键因素往往没有得到充分利用。随着人们对降低生物处理成本的重新重视,减少细胞培养基的总体使用量备受关注。在这项工作中,我们引入了一种基于离子浓度极化(ICP)工艺的中尺度微流体分离装置,通过去除细胞培养物中已知会抑制细胞生长的关键废品,再生废培养基以供再利用。我们证明,多达 75% 的废培养基可以再生和重复使用,而不会影响细胞活力。对抗体生产过程中所消耗材料的详细分析表明,通过再生和循环利用培养基,可以将水处理过程的质量强度提高 33%。鉴于 ICP 分离系统已经扩大到支持大容量处理,因此将这项技术应用于生产规模的生物反应器(如 50 升 CHO 细胞灌流培养)是可行的,从而降低了整体运营成本和用水量。
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引用次数: 0
Adaptation of Aglycosylated Monoclonal Antibodies for Improved Production in Komagataella phaffii. 适应 Aglycosylated 单克隆抗体以改进 Komagataella phaffii 的生产。
IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-14 DOI: 10.1002/bit.28878
Yuchen Yang, Neil C Dalvie, Joseph R Brady, Christopher A Naranjo, Timothy Lorgeree, Sergio A Rodriguez-Aponte, Ryan S Johnston, Mary K Tracey, Carmen M Elenberger, Eric Lee, Mark Tié, Kerry R Love, J Christopher Love

Monoclonal antibodies (mAbs) are a major class of biopharmaceuticals manufactured by well-established processes using Chinese Hamster Ovary (CHO) cells. Next-generation biomanufacturing using alternative hosts like Komagataella phaffii could improve the accessibility of these medicines, address broad societal goals for sustainability, and offer financial advantages for accelerated development of new products. Antibodies produced by K. phaffii, however, may manifest unique molecular quality attributes, like host-dependent, product-related variants, that could raise potential concerns for clinical use. We demonstrate here conservative modifications to the amino acid sequence of aglycosylated antibodies based on the human IgG1 isotype that minimize product-related variations when secreted by K. phaffii. A combination of 2-3 changes of amino acids reduced variations across six different aglycosylated versions of commercial mAbs. Expression of a modified sequence of NIST mAb in both K. phaffii and CHO cells showed comparable biophysical properties and molecular variations. These results suggest a path toward the production of high-quality mAbs that could be expressed interchangeably by either yeast or mammalian cells. Improving molecular designs of proteins to enable a range of manufacturing strategies for well-characterized biopharmaceuticals could accelerate global accessibility and innovations.

单克隆抗体(mAbs)是利用中国仓鼠卵巢(CHO)细胞的成熟工艺制造的一类主要生物制药。使用 Komagataella phaffii 等替代宿主进行下一代生物制造可以提高这些药物的可及性,实现可持续发展的广泛社会目标,并为加速新产品开发提供经济优势。然而,由 K. phaffii 生产的抗体可能会表现出独特的分子质量属性,如依赖于宿主的、与产品相关的变体,这可能会引起临床使用的潜在问题。我们在此展示了对基于人类 IgG1 同工型的糖基化抗体氨基酸序列的保守修饰,这些修饰可使 K. phaffii 分泌的产品相关变异最小化。2-3 个氨基酸变化的组合减少了六种不同的商业 mAbs 的糖基化版本的差异。在 K. phaffii 和 CHO 细胞中表达经过修饰的 NIST mAb 序列显示出相似的生物物理特性和分子变化。这些结果为生产可由酵母或哺乳动物细胞交替表达的高质量 mAb 提供了一条途径。改进蛋白质的分子设计,使一系列具有良好特性的生物制药的生产策略成为可能,这将加速全球生物制药的普及和创新。
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引用次数: 0
Perfusion Process Intensification for Lentivirus Production Using a Novel Scale-Down Model 利用新型缩小模型强化慢病毒生产的灌注过程
IF 3.8 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-13 DOI: 10.1002/bit.28880
Maximilian Klimpel, Beatrice Pflüger-Müller, Marta Arrizabalaga Cascallana, Sarah Schwingal, Nikki Indresh Lal, Thomas Noll, Vicky Pirzas, Holger Laux
Process intensification has become an important strategy to lower production costs and increase manufacturing capacities for biopharmaceutical products. In particular for the production of viral vectors like lentiviruses (LVs), the transition from (fed-)batch to perfusion processes is a key strategy to meet the increasing demands for cell and gene therapy applications. However, perfusion processes are associated with higher medium consumption. Therefore, it is necessary to develop appropriate small-scale models to reduce development costs. In this work, we present the use of the acoustic wave separation technology in combination with the Ambr 250 high throughput bioreactor system for intensified perfusion process development using stable LV producer cells. The intensified perfusion process developed in the Ambr 250 model, performed at a harvest rate of 3 vessel volumes per day (VVD) and high cell densities, resulted in a 1.4-fold higher cell-specific functional virus yield and 2.8-fold higher volumetric virus yield compared to the control process at a harvest rate of 1 VVD. The findings were verified at bench scale after optimizing the bioreactor set-up, resulting in a 1.4-fold higher cell-specific functional virus yield and 3.1-fold higher volumetric virus yield.
工艺强化已成为生物制药产品降低生产成本和提高生产能力的重要战略。特别是在慢病毒(LV)等病毒载体的生产中,从(进料)间歇工艺过渡到灌流工艺是满足细胞和基因治疗应用日益增长的需求的关键策略。然而,灌流工艺需要消耗更多的培养基。因此,有必要开发适当的小规模模型来降低开发成本。在这项工作中,我们介绍了将声波分离技术与 Ambr 250 高通量生物反应器系统相结合,使用稳定的 LV 生产者细胞进行强化灌流工艺开发的情况。在 Ambr 250 模型中开发的强化灌流工艺以每天 3 个血管容积(VVD)的收获率和高细胞密度进行,与收获率为 1 VVD 的对照工艺相比,细胞特异性功能病毒产量高出 1.4 倍,体积病毒产量高出 2.8 倍。在优化生物反应器设置后,研究结果在工作台规模上得到了验证,细胞特异性功能病毒产量提高了 1.4 倍,体积病毒产量提高了 3.1 倍。
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引用次数: 0
Biotechnology and Bioengineering: Volume 121, Number 12, December 2024 生物技术与生物工程第 121 卷第 12 号,2024 年 12 月
IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-11 DOI: 10.1002/bit.28887
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引用次数: 0
Correction to “A High‐Throughput Expression and Screening Platform for Applications‐Driven PETase Engineering” 对 "应用驱动 PETase 工程的高通量表达和筛选平台 "的更正
IF 3.8 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-11 DOI: 10.1002/bit.28882
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引用次数: 0
Mathematical Modeling and Simulation of 1,3‐Propanediol Production by Klebsiella pneumoniae BLh‐1 in a Batch Bioreactor Using Bayesian Statistics 利用贝叶斯统计对批式生物反应器中肺炎克雷伯氏菌 BLh-1 生产 1,3-丙二醇的过程进行数学建模和模拟
IF 3.8 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-08 DOI: 10.1002/bit.28883
Nathalia Lobato Moraes, Mailson Batista de Vilhena, Daniele Misturini Rossi, Bruno Marques Viegas
Mathematical modeling and computer simulation are fundamental for optimizing biotechnological processes, enabling cost reduction and scalability, thereby driving advancements in the bioindustry. In this work, mathematical modeling and estimation of fermentative kinetic parameters were carried out to produce 1,3‐propanediol (1,3‐PDO) from residual glycerol and Klebsiella pneumoniae BLh‐1. The Markov chain Monte Carlo method, using the Metropolis‐Hastings algorithm, was applied to experimental data from a batch bioreactor under aerobic and anaerobic conditions. Sensitivity analysis and parameter evolution studies were conducted. The root‐mean‐square error (rRMSE) was chosen as the validation and calibration metric for the developed mathematical model. The results indicated that the average tolerance of glycerol was 174.68 and 44.85 g L−1, the inhibitory products was 150.95 g L−1 for ethanol and 35.56 g L−1 for 1,3‐PDO, and the maximum specific rate of cell growth was 0.189 and 0.275 h−1, for aerobic and anaerobic cultures, respectively. The model presented excellent fits in both crops, with rRMSE values between 0.09 − 33.74% and 3.58 − 31.82%, for the aerobic and anaerobic environment, respectively. With this, it was possible to evaluate and extract relevant information for a better understanding and control of the bioprocess.
数学建模和计算机模拟是优化生物技术过程、降低成本和提高可扩展性的基础,从而推动生物产业的进步。在这项工作中,对利用残余甘油和肺炎克雷伯氏菌 BLh-1 生产 1,3-丙二醇(1,3-PDO)的发酵动力学参数进行了数学建模和估算。使用 Metropolis-Hastings 算法的马尔科夫链蒙特卡罗方法被应用于有氧和厌氧条件下批量生物反应器的实验数据。进行了敏感性分析和参数演变研究。选择均方根误差(rRMSE)作为所开发数学模型的验证和校准指标。结果表明,在有氧和厌氧培养条件下,甘油的平均耐受量分别为 174.68 和 44.85 g L-1,乙醇的抑制产物为 150.95 g L-1,1,3-PDO 的抑制产物为 35.56 g L-1,细胞生长的最大比速率分别为 0.189 和 0.275 h-1。该模型对两种作物的拟合效果都很好,有氧环境和厌氧环境的 rRMSE 值分别为 0.09 - 33.74% 和 3.58 - 31.82%。因此,可以对相关信息进行评估和提取,以便更好地理解和控制生物过程。
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引用次数: 0
Implemention of Innovative Process Analytical Technologies to Characterize Critical Quality Attributes of Co‐Formulated Monoclonal Antibody Products 采用创新工艺分析技术表征共配单克隆抗体产品的关键质量属性
IF 3.8 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-08 DOI: 10.1002/bit.28881
Apurva Godbole, Lyufei Chen, Jay Desai, Smita Raghava, Richard Ruzanski, Bhumit Patel, Emmanuel Appiah‐Amponsah, Hanzhou Feng
Characterizing co‐formulated monoclonal antibodies (mAbs) poses significant challenges in the pharmaceutical industry. Due to the high structural similarity of the mAbs, traditional analytical methods, compounded by the lengthy method development process, hinder product development and manufacturing efficiency. There is increasing critical need in the pharmaceutical industry to streamline analytical approaches, minimizing time and resources, ensuring a rapid clinical entry and cost‐effective manufacturing. This study investigates the application of process analytical technologies (PAT) to address such challenges. Our investigation introduces two complementary technologies, on‐line ultra‐performance liquid chromatography (online UPLC) and multimode fluorescence spectroscopy (MMFS), as potential PAT tools tailored for characterizing critical quality attributes (CQA) in co‐formulated mAb products. Specifically, the CQAs under evaluation include the total protein concentration of the mAbs within the co‐formulation and the ratio of mAb A to mAb B. Online UPLC enables direct and automated measurement of the CQAs through physical separation, while MMFS determines them in a non‐destructive and more swift manner based on chemometric modeling. We demonstrate these technologies' comparable performance to conventional methods, alongside substantial benefits such as reduced analytical turnaround time and decreased laboratory efforts. Ultimately, integrating them as innovative PAT tools expedites the delivery of therapeutic solutions to patients and enhances manufacturing efficiency, aligning with the imperative for swift translation of scientific discoveries into clinical benefits.
共配制单克隆抗体(mAbs)的表征给制药行业带来了巨大挑战。由于 mAbs 的结构高度相似,传统的分析方法加上漫长的方法开发过程阻碍了产品开发和生产效率。制药行业越来越迫切需要简化分析方法,最大限度地减少时间和资源,确保产品快速进入临床并实现经济高效的生产。本研究调查了过程分析技术 (PAT) 在应对此类挑战中的应用。我们的研究引入了在线超高效液相色谱(UPLC)和多模荧光光谱(MMFS)这两种互补技术,作为潜在的 PAT 工具,专门用于表征共配制 mAb 产品的关键质量属性(CQA)。在线超高效液相色谱(UPLC)可通过物理分离直接自动测量 CQA,而多模式荧光光谱(MMFS)则基于化学计量建模以非破坏性和更快速的方式确定 CQA。我们展示了这些技术与传统方法相当的性能,以及缩短分析周转时间和减少实验室工作量等实质性优势。最终,将这些技术整合为创新的 PAT 工具,可加快向患者提供治疗方案并提高生产效率,这与将科学发现迅速转化为临床效益的要求不谋而合。
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引用次数: 0
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