通过基于蒙特卡罗优化的 QSAR 建模、分子对接研究和 ADMET 预测,硅学开发新型血管紧张素转换酶-I 抑制剂。

IF 2.6 4区 生物学 Q2 BIOLOGY Computational Biology and Chemistry Pub Date : 2024-08-03 DOI:10.1016/j.compbiolchem.2024.108167
Sandra Šarić , Tomislav Kostić , Milan Lović , Ivana Aleksić , Dejan Hristov , Miljana Šarac , Aleksandar M. Veselinović
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引用次数: 0

摘要

在治疗高血压、中风和心力衰竭等心血管疾病(CVD)的药物疗法中,以血管紧张素转换酶 I(ACE-I)为靶点是一种重要的治疗方法。这项研究利用蒙特卡洛优化技术建立了 QSAR 模型,研究了一系列已知具有抑制 ACE-I 特性的化合物。建模过程包括利用局部分子图不变式和 SMILES 符号作为描述符来开发不依赖于构象的 QSAR 模型。为确保模型的准确性,数据集被分割成不同的训练集、校准集和测试集。通过应用各种统计分析,对模型的有效性、可靠性和预测能力进行了评估,结果令人鼓舞。此外,还确定了源自 SMILES 符号描述符的分子片段,以阐明在化合物中观察到的活性变化。通过分子对接对 QSAR 模型和设计的抑制剂进行了验证,结果与 QSAR 结果十分吻合。为了确定所设计分子的药物价值,计算了它们的理化性质,以帮助预测 ADME 参数、药代动力学属性、药物相似性和药物化学兼容性。
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In silico development of novel angiotensin-converting-enzyme-I inhibitors by Monte Carlo optimization based QSAR modeling, molecular docking studies and ADMET predictions

Within the realm of pharmacological strategies for cardiovascular diseases (CVD) like hypertension, stroke, and heart failure, targeting the angiotensin-converting enzyme I (ACE-I) stands out as a significant treatment approach. This study employs QSAR modeling using Monte Carlo optimization techniques to investigate a range of compounds known for their ACE-I inhibiting properties. The modeling process involved leveraging local molecular graph invariants and SMILES notation as descriptors to develop conformation-independent QSAR models. The dataset was segmented into distinct sets for training, calibration, and testing to ensure model accuracy. Through the application of various statistical analyses, the efficacy, reliability, and predictive capability of the models were evaluated, showcasing promising outcomes. Additionally, molecular fragments derived from SMILES notation descriptors were identified to elucidate the activity changes observed in the compounds. The validation of the QSAR model and designed inhibitors was carried out via molecular docking, aligning well with the QSAR results. To ascertain the drug-worthiness of the designed molecules, their physicochemical properties were computed, aiding in the prediction of ADME parameters, pharmacokinetic attributes, drug-likeness, and medicinal chemistry compatibility.

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来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
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