利用环境 DNA 评估全球海洋中的后生动物模式。

IF 2.9 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Royal Society Open Science Pub Date : 2024-08-14 eCollection Date: 2024-08-01 DOI:10.1098/rsos.240724
Nathan R Geraldi, Silvia G Acinas, Intikhab Alam, Josep M Gasol, María Luz Fernández-de-Puelles, Caterina R Giner, Santiago Hernández León, Ramiro Logares, Ramon Massana, Pablo Sánchez, Vladimir Bajic, Takashi Gojobori, Carlos M Duarte
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引用次数: 0

摘要

鉴于海洋生态系统正在以前所未有的速度发生变化,因此需要记录海洋中动物的大规模模式,并确定这些模式的驱动因素,以便开展保护工作。我们利用塔拉大洋(Tara Oceans)和马拉斯皮纳(Malaspina)两次全球探险队的现有数据集,这些探险队环绕大洋航行,取样深度低至 4000 米,通过从海水中提取的环境 DNA(eDNA)来评估后生动物。我们根据代谢编码描述了元动物门类和纲的分类丰富度模式,利用元基因组数据集推断了各门类的相对丰富度,并将这些数据与环境变量联系起来。节肢动物是海面上分类最丰富的元动物门类,而刺胞动物是浮游区分类最丰富的门类。来自元基因组数据集的海洋元虫类 eDNA 有一半来自节肢动物,其次是刺胞动物和线虫。我们发现,平均表面温度和初级生产力与元动物分类丰富度呈正相关。我们的发现与现有的知识一致,即温度和初级生产力是海洋表面特定类群分类丰富度的重要驱动因素,但这些相关性在深海中并不明显。大规模的 eDNA 测序可以提高对动物分布的了解,尤其是对取样困难的深海而言。
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Assessing patterns of metazoans in the global ocean using environmental DNA.

Documenting large-scale patterns of animals in the ocean and determining the drivers of these patterns is needed for conservation efforts given the unprecedented rates of change occurring within marine ecosystems. We used existing datasets from two global expeditions, Tara Oceans and Malaspina, that circumnavigated the oceans and sampled down to 4000 m to assess metazoans from environmental DNA (eDNA) extracted from seawater. We describe patterns of taxonomic richness within metazoan phyla and orders based on metabarcoding and infer the relative abundance of phyla using metagenome datasets, and relate these data to environmental variables. Arthropods had the greatest taxonomic richness of metazoan phyla at the surface, while cnidarians had the greatest richness in pelagic zones. Half of the marine metazoan eDNA from metagenome datasets was from arthropods, followed by cnidarians and nematodes. We found that mean surface temperature and primary productivity were positively related to metazoan taxonomic richness. Our findings concur with existing knowledge that temperature and primary productivity are important drivers of taxonomic richness for specific taxa at the ocean's surface, but these correlations are less evident in the deep ocean. Massive sequencing of eDNA can improve understanding of animal distributions, particularly for the deep ocean where sampling is challenging.

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来源期刊
Royal Society Open Science
Royal Society Open Science Multidisciplinary-Multidisciplinary
CiteScore
6.00
自引率
0.00%
发文量
508
审稿时长
14 weeks
期刊介绍: Royal Society Open Science is a new open journal publishing high-quality original research across the entire range of science on the basis of objective peer-review. The journal covers the entire range of science and mathematics and will allow the Society to publish all the high-quality work it receives without the usual restrictions on scope, length or impact.
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