抗冻蛋白的活性:从与冰结合到抑制冰生长

IF 2.9 4区 工程技术 Q1 MULTIDISCIPLINARY SCIENCES Advanced Theory and Simulations Pub Date : 2024-08-29 DOI:10.1002/adts.202400642
Uday Sankar Midya, Sanjoy Bandyopadhyay
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引用次数: 0

摘要

抗冻蛋白(AFPs)可降低水的冰点,但不会明显影响水的熔点。为了阐明抗冻蛋白的行为,我们以褐斑天牛抗冻蛋白(TmAFP)为范例进行了一系列模拟。本综述将重点介绍这些研究的重要发现。显式溶剂分子动力学模拟表明,为了吸附到冰表面,TmAFP 的冰结合表面(IBS)形成了一种非常特殊的水合结构和动力学。通过对模型 IBS 的异质冰成核模拟,确定了蛋白质冰结合状态下水分子和蛋白质残基的互补排列。结果表明,冰的规则结构在蛋白质-冰界面上并没有得到保持。研究发现,水分子与蛋白质残基形成了五元氢键环。研究进一步证明,当 TmAFP 自由存在于溶液中时,它本身就带有结合图案。疏水作用和氢键作用共同在蛋白质的 IBS 上形成了这种图案。此外,研究还发现,在蛋白质与冰平面结合的情况下,冰的生长会受到开尔文效应的抑制。
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Antifreeze Protein Activity: From Ice Binding to Ice Growth Inhibition
Antifreeze proteins (AFPs) lower the freezing point of water without affecting the melting point appereciably. To elucidate the behavior of AFPs, a series of simulations are conducted using Tenebrio molitor antifreeze protein (TmAFP) as a paradigm protein. This review highlights important findings obtained from those studies. Explicit solvent molecular dynamics simulations illustrate that, in order to get adsorbed on to the ice surfaces, a very specific kind of hydration structure and dynamics are developed on the ice-binding surface (IBS) of TmAFP. The complementary arrangement of water molecules and protein residues in the ice-bound state of the protein is determined from heterogeneous ice nucleation simulation on a model IBS. The result shows that the regular structure of ice is not maintained at the protein-ice interface. Water molecules are found to form five-membered hydrogen-bonded rings with protein residues. It is further demonstrated that TmAFP carries its own binding motif while it is present freely in solution. Hydrophobic and hydrogen bonding interactions together contribute to form such motif on the IBS of the protein. Further, the growth of ice in presence of the protein bound to an ice plane is found to be inhibited by the Kelvin effect.
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来源期刊
Advanced Theory and Simulations
Advanced Theory and Simulations Multidisciplinary-Multidisciplinary
CiteScore
5.50
自引率
3.00%
发文量
221
期刊介绍: Advanced Theory and Simulations is an interdisciplinary, international, English-language journal that publishes high-quality scientific results focusing on the development and application of theoretical methods, modeling and simulation approaches in all natural science and medicine areas, including: materials, chemistry, condensed matter physics engineering, energy life science, biology, medicine atmospheric/environmental science, climate science planetary science, astronomy, cosmology method development, numerical methods, statistics
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