{"title":"抗冻蛋白的活性:从与冰结合到抑制冰生长","authors":"Uday Sankar Midya, Sanjoy Bandyopadhyay","doi":"10.1002/adts.202400642","DOIUrl":null,"url":null,"abstract":"Antifreeze proteins (AFPs) lower the freezing point of water without affecting the melting point appereciably. To elucidate the behavior of AFPs, a series of simulations are conducted using <i>Tenebrio molitor</i> antifreeze protein (<i>Tm</i>AFP) as a paradigm protein. This review highlights important findings obtained from those studies. Explicit solvent molecular dynamics simulations illustrate that, in order to get adsorbed on to the ice surfaces, a very specific kind of hydration structure and dynamics are developed on the ice-binding surface (IBS) of <i>Tm</i>AFP. The complementary arrangement of water molecules and protein residues in the ice-bound state of the protein is determined from heterogeneous ice nucleation simulation on a model IBS. The result shows that the regular structure of ice is not maintained at the protein-ice interface. Water molecules are found to form five-membered hydrogen-bonded rings with protein residues. It is further demonstrated that <i>Tm</i>AFP carries its own binding motif while it is present freely in solution. Hydrophobic and hydrogen bonding interactions together contribute to form such motif on the IBS of the protein. Further, the growth of ice in presence of the protein bound to an ice plane is found to be inhibited by the Kelvin effect.","PeriodicalId":7219,"journal":{"name":"Advanced Theory and Simulations","volume":"206 1","pages":""},"PeriodicalIF":2.9000,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Antifreeze Protein Activity: From Ice Binding to Ice Growth Inhibition\",\"authors\":\"Uday Sankar Midya, Sanjoy Bandyopadhyay\",\"doi\":\"10.1002/adts.202400642\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Antifreeze proteins (AFPs) lower the freezing point of water without affecting the melting point appereciably. To elucidate the behavior of AFPs, a series of simulations are conducted using <i>Tenebrio molitor</i> antifreeze protein (<i>Tm</i>AFP) as a paradigm protein. This review highlights important findings obtained from those studies. Explicit solvent molecular dynamics simulations illustrate that, in order to get adsorbed on to the ice surfaces, a very specific kind of hydration structure and dynamics are developed on the ice-binding surface (IBS) of <i>Tm</i>AFP. The complementary arrangement of water molecules and protein residues in the ice-bound state of the protein is determined from heterogeneous ice nucleation simulation on a model IBS. The result shows that the regular structure of ice is not maintained at the protein-ice interface. Water molecules are found to form five-membered hydrogen-bonded rings with protein residues. It is further demonstrated that <i>Tm</i>AFP carries its own binding motif while it is present freely in solution. Hydrophobic and hydrogen bonding interactions together contribute to form such motif on the IBS of the protein. Further, the growth of ice in presence of the protein bound to an ice plane is found to be inhibited by the Kelvin effect.\",\"PeriodicalId\":7219,\"journal\":{\"name\":\"Advanced Theory and Simulations\",\"volume\":\"206 1\",\"pages\":\"\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2024-08-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advanced Theory and Simulations\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1002/adts.202400642\",\"RegionNum\":4,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advanced Theory and Simulations","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1002/adts.202400642","RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
Antifreeze Protein Activity: From Ice Binding to Ice Growth Inhibition
Antifreeze proteins (AFPs) lower the freezing point of water without affecting the melting point appereciably. To elucidate the behavior of AFPs, a series of simulations are conducted using Tenebrio molitor antifreeze protein (TmAFP) as a paradigm protein. This review highlights important findings obtained from those studies. Explicit solvent molecular dynamics simulations illustrate that, in order to get adsorbed on to the ice surfaces, a very specific kind of hydration structure and dynamics are developed on the ice-binding surface (IBS) of TmAFP. The complementary arrangement of water molecules and protein residues in the ice-bound state of the protein is determined from heterogeneous ice nucleation simulation on a model IBS. The result shows that the regular structure of ice is not maintained at the protein-ice interface. Water molecules are found to form five-membered hydrogen-bonded rings with protein residues. It is further demonstrated that TmAFP carries its own binding motif while it is present freely in solution. Hydrophobic and hydrogen bonding interactions together contribute to form such motif on the IBS of the protein. Further, the growth of ice in presence of the protein bound to an ice plane is found to be inhibited by the Kelvin effect.
期刊介绍:
Advanced Theory and Simulations is an interdisciplinary, international, English-language journal that publishes high-quality scientific results focusing on the development and application of theoretical methods, modeling and simulation approaches in all natural science and medicine areas, including:
materials, chemistry, condensed matter physics
engineering, energy
life science, biology, medicine
atmospheric/environmental science, climate science
planetary science, astronomy, cosmology
method development, numerical methods, statistics