GeoPick - 用于按照最佳做法对自然历史藏品进行地理参照的网络应用程序

IF 5.4 1区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Ecography Pub Date : 2024-08-30 DOI:10.1111/ecog.07431
Arnald Marcer, Agustí Escobar, Arthur D. Chapman, John R. Wieczorek
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引用次数: 0

摘要

地理参照是自然历史藏品数字化的关键过程,因为它能为保存的标本采集地点分配空间坐标,便于在生态、进化和保护研究中使用。GBIF 等公共资料库中的地理参照数据往往缺失或不完整,影响了其在研究中的应用,也限制了公共机构的投资回报。尽管已经有了地理参照最佳实践指南和广为接受的生物多样性数据标准,但仍然缺乏一个简单而有效的软件工具来实现这两个概念。我们推出 GeoPick 的目的是为收藏界提供一个符合标准的工具,简化地理参照过程,使其更具成本效益,并通过应用最佳实践,为改善公共资料库中的出现数据做出贡献。GeoPick还为用户和机构之间通过共享地理参照数据开展合作提供了可能。该工具由 GBIF 托管,网址为 https://geopick.gbif.org,并且是开源的。其代码可从 GitHub 公共仓库(https://github.com/rtdeb/GeoPick)获取:达尔文核心、地理参照、自然历史藏品、点-半径法、网络应用、已知文本格式、WKT
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GeoPick ‐ A web application for georeferencing natural history collections following best practices
Georeferencing is a key process in the digitization of natural history collections as it assigns spatial coordinates to preserved specimen collecting locations, facilitating their use in ecological, evolutionary and conservation research. Georeference data in public repositories such as GBIF is often missing or incomplete, jeopardising their use in research and limiting the return on investment made by public institutions. Despite the existence of guidelines for best practices for georeferencing and widely accepted standards for biodiversity data, there is a lack of a simple yet effective software tool that offers the implementation of both concepts. We present GeoPick with the aim to offer the collections community a standards‐compliant tool that eases the georeferencing process, making it more cost‐effective, and which, by applying best practices, contributes to the betterment of the occurrence data in public repositories. GeoPick also offers the possibility of collaboration between users and institutions through the sharing of georeferences. The tool is hosted by GBIF at https://geopick.gbif.org, and is open source. Its code is available at a public GitHub repository (https://github.com/rtdeb/GeoPick).Keywords: Darwin Core, georeferencing, natural history collections, point‐radius method, web application, Well Known Text Format, WKT
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来源期刊
Ecography
Ecography 环境科学-生态学
CiteScore
11.60
自引率
3.40%
发文量
122
审稿时长
8-16 weeks
期刊介绍: ECOGRAPHY publishes exciting, novel, and important articles that significantly advance understanding of ecological or biodiversity patterns in space or time. Papers focusing on conservation or restoration are welcomed, provided they are anchored in ecological theory and convey a general message that goes beyond a single case study. We encourage papers that seek advancing the field through the development and testing of theory or methodology, or by proposing new tools for analysis or interpretation of ecological phenomena. Manuscripts are expected to address general principles in ecology, though they may do so using a specific model system if they adequately frame the problem relative to a generalized ecological question or problem. Purely descriptive papers are considered only if breaking new ground and/or describing patterns seldom explored. Studies focused on a single species or single location are generally discouraged unless they make a significant contribution to advancing general theory or understanding of biodiversity patterns and processes. Manuscripts merely confirming or marginally extending results of previous work are unlikely to be considered in Ecography. Papers are judged by virtue of their originality, appeal to general interest, and their contribution to new developments in studies of spatial and temporal ecological patterns. There are no biases with regard to taxon, biome, or biogeographical area.
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