{"title":"大利什曼原虫丙酰 CoA 羧化酶生物素羧基载体蛋白结构域的骨架分配及其与同源生物素蛋白连接酶的相互作用。","authors":"Sonika Bhatnagar, Debodyuti Sadhukhan, Monica Sundd","doi":"10.1007/s12104-024-10205-2","DOIUrl":null,"url":null,"abstract":"<div><p>Propionyl CoA carboxylase (PCC) is a multimeric enzyme composed of two types of subunits, α and β arranged in α<sub>6</sub>β<sub>6</sub> stoichiometry. The α-subunit consists of an N-terminal carboxylase domain, a carboxyl transferase domains, and a C-terminal biotin carboxyl carrier protein domain (BCCP). The β-subunit is made up of an N- and a C- carboxyl transferase domain. During PCC catalysis, the BCCP domain plays a central role by transporting a carboxyl group from the α-subunit to the β-subunit, and finally to propionyl CoA carboxylase, resulting in the formation of methyl malonyl CoA. A point mutation in any of the subunits interferes with multimer assembly and function. Due to the association of this enzyme with propionic acidemia, a genetic metabolic disorder found in humans, PCC has become an enzyme of wide spread interest. Interestingly, unicellular eukaryotes like <i>Leishmania</i> also possess a PCC in their mitochondria that displays high sequence conservation with the human enzyme. Thus, to understand the function of this enzyme at the molecular level, we have initiated studies on <i>Leishmania major</i> PCC (<i>Lm</i>PCC). Here we report chemical shift assignments of <i>Lm</i>PCC BCCP domain using NMR. Conformational changes in <i>Lm</i>PCC BCCP domain upon biotinylation, as well as upon interaction with its cognate biotinylating enzyme (Biotin protein ligase from <i>L. major</i>) have also been reported. Our studies disclose residues important for <i>Lm</i>PCC BCCP interaction and function.</p></div>","PeriodicalId":492,"journal":{"name":"Biomolecular NMR Assignments","volume":"18 2","pages":"309 - 314"},"PeriodicalIF":0.8000,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Backbone assignments of the biotin carboxyl carrier protein domain of Propionyl CoA carboxylase of Leishmania major and its interaction with its cognate Biotin protein ligase\",\"authors\":\"Sonika Bhatnagar, Debodyuti Sadhukhan, Monica Sundd\",\"doi\":\"10.1007/s12104-024-10205-2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Propionyl CoA carboxylase (PCC) is a multimeric enzyme composed of two types of subunits, α and β arranged in α<sub>6</sub>β<sub>6</sub> stoichiometry. The α-subunit consists of an N-terminal carboxylase domain, a carboxyl transferase domains, and a C-terminal biotin carboxyl carrier protein domain (BCCP). The β-subunit is made up of an N- and a C- carboxyl transferase domain. During PCC catalysis, the BCCP domain plays a central role by transporting a carboxyl group from the α-subunit to the β-subunit, and finally to propionyl CoA carboxylase, resulting in the formation of methyl malonyl CoA. A point mutation in any of the subunits interferes with multimer assembly and function. Due to the association of this enzyme with propionic acidemia, a genetic metabolic disorder found in humans, PCC has become an enzyme of wide spread interest. Interestingly, unicellular eukaryotes like <i>Leishmania</i> also possess a PCC in their mitochondria that displays high sequence conservation with the human enzyme. Thus, to understand the function of this enzyme at the molecular level, we have initiated studies on <i>Leishmania major</i> PCC (<i>Lm</i>PCC). Here we report chemical shift assignments of <i>Lm</i>PCC BCCP domain using NMR. Conformational changes in <i>Lm</i>PCC BCCP domain upon biotinylation, as well as upon interaction with its cognate biotinylating enzyme (Biotin protein ligase from <i>L. major</i>) have also been reported. Our studies disclose residues important for <i>Lm</i>PCC BCCP interaction and function.</p></div>\",\"PeriodicalId\":492,\"journal\":{\"name\":\"Biomolecular NMR Assignments\",\"volume\":\"18 2\",\"pages\":\"309 - 314\"},\"PeriodicalIF\":0.8000,\"publicationDate\":\"2024-09-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biomolecular NMR Assignments\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s12104-024-10205-2\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOPHYSICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomolecular NMR Assignments","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s12104-024-10205-2","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOPHYSICS","Score":null,"Total":0}
引用次数: 0
摘要
丙酰基 CoA 羧化酶(PCC)是一种多聚酶,由α和β两种亚基组成,以α6β6 的比例排列。α亚基由一个 N 端羧化酶结构域、一个羧基转移酶结构域和一个 C 端生物素羧基载体蛋白结构域(BCP)组成。β亚基由一个 N 端羧基转移酶结构域和一个 C 端羧基转移酶结构域组成。在 PCC 催化过程中,BCCP 结构域起着核心作用,它将羧基从 α-亚基转移到 β-亚基,最后转移到丙酰基 CoA 羧化酶,从而形成甲基丙二酰 CoA。任何一个亚基的点突变都会干扰多聚体的组装和功能。由于这种酶与丙酸血症(一种在人类中发现的遗传代谢紊乱)有关,PCC 已成为一种广受关注的酶。有趣的是,单细胞真核生物(如利什曼原虫)的线粒体中也有一种与人类酶序列高度一致的 PCC。因此,为了在分子水平上了解这种酶的功能,我们启动了对利什曼原虫主要 PCC(LmPCC)的研究。在此,我们利用核磁共振技术报告了 LmPCC BCCP 结构域的化学位移。我们还报告了 LmPCC BCCP 结构域在生物素化以及与其同源生物素化酶(大头利什曼原虫生物素蛋白连接酶)相互作用时的构象变化。我们的研究揭示了对 LmPCC BCCP 的相互作用和功能非常重要的残基。
Backbone assignments of the biotin carboxyl carrier protein domain of Propionyl CoA carboxylase of Leishmania major and its interaction with its cognate Biotin protein ligase
Propionyl CoA carboxylase (PCC) is a multimeric enzyme composed of two types of subunits, α and β arranged in α6β6 stoichiometry. The α-subunit consists of an N-terminal carboxylase domain, a carboxyl transferase domains, and a C-terminal biotin carboxyl carrier protein domain (BCCP). The β-subunit is made up of an N- and a C- carboxyl transferase domain. During PCC catalysis, the BCCP domain plays a central role by transporting a carboxyl group from the α-subunit to the β-subunit, and finally to propionyl CoA carboxylase, resulting in the formation of methyl malonyl CoA. A point mutation in any of the subunits interferes with multimer assembly and function. Due to the association of this enzyme with propionic acidemia, a genetic metabolic disorder found in humans, PCC has become an enzyme of wide spread interest. Interestingly, unicellular eukaryotes like Leishmania also possess a PCC in their mitochondria that displays high sequence conservation with the human enzyme. Thus, to understand the function of this enzyme at the molecular level, we have initiated studies on Leishmania major PCC (LmPCC). Here we report chemical shift assignments of LmPCC BCCP domain using NMR. Conformational changes in LmPCC BCCP domain upon biotinylation, as well as upon interaction with its cognate biotinylating enzyme (Biotin protein ligase from L. major) have also been reported. Our studies disclose residues important for LmPCC BCCP interaction and function.
期刊介绍:
Biomolecular NMR Assignments provides a forum for publishing sequence-specific resonance assignments for proteins and nucleic acids as Assignment Notes. Chemical shifts for NMR-active nuclei in macromolecules contain detailed information on molecular conformation and properties.
Publication of resonance assignments in Biomolecular NMR Assignments ensures that these data are deposited into a public database at BioMagResBank (BMRB; http://www.bmrb.wisc.edu/), where they are available to other researchers. Coverage includes proteins and nucleic acids; Assignment Notes are processed for rapid online publication and are published in biannual online editions in June and December.