A mitochondria-targeted near-infrared fluorescent probe for pH monitoring in living cells based on the rhodamine-hemicyanine hybrid structure

Mitochondrial pH plays a crucial role in cellular metabolism and pathological conditions. Thus, tracking changes in mitochondrial pH is essential for understanding its impact on cellular processes. In this work, we report a mitochondria-targetable near-infrared pH-sensitive fluorescent probe, Rh-NorCy, based on the rhodamine-hemicyanine hybrid structure. Rh-NorCy contains a non-alkylated indolenine moiety as recognition site of pH and a triphenylphosphonium moiety as the mitochondria-targeting group. As the solution pH decreases from 9.1 to 5.8, the indolium N atom in the Rh-NorCy structure undergoes protonation, leading to a red shift of its maximum absorption wavelength from 568 nm to 709 nm and a significant fluorescence enhancement at 748 nm simultaneously. Importantly, Rh-NorCy exhibits a suitable pK_a (7.27) to map the pH variation in the mitochondria. Rh-NorCy demonstrates excellent photostability, minimal cytotoxicity, and strong mitochondria-targeting capability. It has been used to observe mitochondrial pH fluctuations during starvation and carbonylcyanide m-chlorophenylhydrazone (CCCP)-induced mitophagy.