Gizem Dilara Ozdemir, Mehmet Akif Ozdemir, Mustafa Sen, Utku Kürşat Ercan
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The DBSCAN model's performance is evaluated using homogeneity, completeness, and adjusted rand index with a predictive data distribution graph. The best results are achieved with 3,3′,5,5′-tetramethylbenzidine–potassium iodide colorimetric assay solution immediately after plasma treatment, with values of 0.894, 0.996, and 0.826. t-SNE is further conducted for the best-case scenario to evaluate the clustering efficacy and find the best combination of features to better present the results. Correspondingly, t-SNE enhances clustering efficacy and adeptly handles challenging points. The approach pioneers dynamic and comprehensive solutions, showcasing ML's precision and t-SNE's transformative visualization. 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The focus is on CAP's therapeutic potential, particularly its ability to generate reactive oxygen and nitrogen species (RONS) that play a crucial role in antimicrobial activity. RGB, HSV, LAB, YCrCb, and grayscale color spaces are extracted from the colorimetric expression of oxidative stress induced by RONS, and these features are used for unsupervised ML, employing density-based spatial clustering of applications with noise (DBSCAN). The DBSCAN model's performance is evaluated using homogeneity, completeness, and adjusted rand index with a predictive data distribution graph. The best results are achieved with 3,3′,5,5′-tetramethylbenzidine–potassium iodide colorimetric assay solution immediately after plasma treatment, with values of 0.894, 0.996, and 0.826. t-SNE is further conducted for the best-case scenario to evaluate the clustering efficacy and find the best combination of features to better present the results. Correspondingly, t-SNE enhances clustering efficacy and adeptly handles challenging points. The approach pioneers dynamic and comprehensive solutions, showcasing ML's precision and t-SNE's transformative visualization. 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引用次数: 0
摘要
在这项变革性研究中,采用了机器学习(ML)和 t 分布随机邻域嵌入(t-SNE)来解释冷大气等离子体(CAP)处理过的水的比色图像中的复杂模式。研究重点是 CAP 的治疗潜力,尤其是其生成活性氧和氮物种 (RONS) 的能力,这种能力在抗菌活性中发挥着至关重要的作用。从 RONS 诱导的氧化应激的色度表达中提取了 RGB、HSV、LAB、YCrCb 和灰度色彩空间,并将这些特征用于无监督 ML,采用基于密度的带噪声应用空间聚类(DBSCAN)。DBSCAN 模型的性能使用同质性、完整性和调整后的兰德指数以及预测数据分布图进行评估。在血浆处理后立即使用 3,3′,5,5′-四甲基联苯胺-碘化钾比色测定溶液时,结果最佳,其值分别为 0.894、0.996 和 0.826。相应地,t-SNE 增强了聚类效果,并能巧妙地处理挑战点。这种方法开创了动态综合解决方案,展示了 ML 的精确性和 t-SNE 的变革性可视化。通过这种创新的融合,复杂的关系得以解开,标志着生物医学分析方法的范式转变。
Unveiling the Potential: Can Machine Learning Cluster Colorimetric Images of Cold Atmospheric Plasma Treatment?
In this transformative study, machine learning (ML) and t-distributed stochastic neighbor embedding (t-SNE) are employed to interpret intricate patterns in colorimetric images of cold atmospheric plasma (CAP)-treated water. The focus is on CAP's therapeutic potential, particularly its ability to generate reactive oxygen and nitrogen species (RONS) that play a crucial role in antimicrobial activity. RGB, HSV, LAB, YCrCb, and grayscale color spaces are extracted from the colorimetric expression of oxidative stress induced by RONS, and these features are used for unsupervised ML, employing density-based spatial clustering of applications with noise (DBSCAN). The DBSCAN model's performance is evaluated using homogeneity, completeness, and adjusted rand index with a predictive data distribution graph. The best results are achieved with 3,3′,5,5′-tetramethylbenzidine–potassium iodide colorimetric assay solution immediately after plasma treatment, with values of 0.894, 0.996, and 0.826. t-SNE is further conducted for the best-case scenario to evaluate the clustering efficacy and find the best combination of features to better present the results. Correspondingly, t-SNE enhances clustering efficacy and adeptly handles challenging points. The approach pioneers dynamic and comprehensive solutions, showcasing ML's precision and t-SNE's transformative visualization. Through this innovative fusion, complex relationships are unraveled, marking a paradigm shift in biomedical analytical methodologies.