1,3-二极环加成反应中从同步到异步机制的转变:极化性视角。

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-09-30 DOI:10.1007/s00894-024-06161-2
César Barrales-Martínez, Rocío Durán, Pablo Jaque
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引用次数: 0

摘要

背景:本研究探讨了氧化二氮烯和取代乙烯之间的三个 1,3-二极环加成反应的能量和极化特性,重点是同步机制向异步机制的过渡。利用反应力常数进行的同步性分析表明,随着氰基数量的增加,键的演化过程变得越来越非耦合。极化性分析表明,在所有情况下,各向同性的极化性都在过渡态附近达到最大值,而随着异步性的增加,极化性的各向异性从过渡态向产物方向移动。转变越大,机制越不同步,这一点可以从过渡区域的权重反映出来。对新形成的西格玛键的平行和垂直极化率分量的详细研究表明,平行分量的演变与沿反应坐标的能量变化密切相关,尤其是在同步反应中。我们还发现了平行分量从过渡态到最大态的位移与机理同步性之间的关系。位移越大,机制越不同步。这些发现表明,异步 1,3-二极环加成机制的特点是各向同性和各向异性极化率的解耦,以及平行组分的最大极化率状态向产物方向的移动:密度泛函理论计算是在 B3LYP/6-311 + + G(d,p)//B3LYP/6-31G(d,p)理论水平上进行的。使用高斯 16 中的固有反应坐标法计算了反应路径上每一点的极化率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Transition from synchronous to asynchronous mechanisms in 1,3-dipolar cycloadditions: a polarizability perspective

Context

This study investigates the energetic and polarizability characteristics of three 1,3-dipolar cycloaddition reactions between diazene oxide and substituted ethylenes, focusing on the transition from synchronous to asynchronous mechanisms. Synchronicity analysis, using the reaction force constant, indicates that the bond evolution process becomes increasingly decoupled as the number of cyano groups increases. Polarizability analysis reveals that isotropic polarizability reaches its maximum near the transition state in all cases, while anisotropy of polarizability shifts from the transition state toward the product direction as asynchronicity increases. The larger the shift, the more asynchronous the mechanism, as reflected by the weight of the transition region. A detailed examination of the parallel and perpendicular polarizability components to the newly formed sigma bonds shows that the evolution of the parallel component is closely aligned with the energetic changes along the reaction coordinate, particularly in the synchronous reaction. We have also identified a relationship between the displacement in the maximum state of the parallel component from the transition state and the synchronicity of the mechanism. The larger the displacement, the more asynchronous the mechanism. These findings suggest that asynchronous 1,3-dipolar cycloaddition mechanisms are characterized by a decoupling of isotropic and anisotropic polarizabilities and a shift in the maximum polarizability state of the parallel component toward the product direction.

Methods

Density functional theory calculations were performed at the B3LYP/6–311 +  + G(d,p)//B3LYP/6-31G(d,p) level of theory. The polarizability was calculated at each point of the reaction path, obtained using the intrinsic reaction coordinate method, as implemented in Gaussian 16.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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