M M Enes Yurtsever, Yilmaz Atay, Bilgehan Arslan, Seref Sagiroglu
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The utilization of StyleGANv2-ADA is proposed in this paper for augmenting brain MRI slices to enhance the performance of deep learning models. Specifically, augmentation is applied solely to the training data to prevent any potential leakage. The StyleGanv2-ADA model is trained with the Gazi Brains 2020, BRaTS 2021, and Br35h datasets using the researchers' default settings. The effectiveness of the proposed method is demonstrated on datasets for brain tumor classification, resulting in a notable improvement in the overall accuracy of the model for brain tumor classification on all the Gazi Brains 2020, BraTS 2021, and Br35h datasets. Importantly, the utilization of StyleGANv2-ADA on the Gazi Brains 2020 Dataset represents a novel experiment in the literature. The results show that the augmentation with StyleGAN can help overcome the challenges of working with medical data and the sparsity of ground truth data. Data augmentation employing the StyleGANv2-ADA GAN model yielded the highest overall accuracy for brain tumor classification on the BraTS 2021 and Gazi Brains 2020 datasets, together with the BR35H dataset, achieving 75.18%, 99.36%, and 98.99% on the EfficientNetV2S models, respectively. This study emphasizes the potency of GANs for augmenting medical imaging datasets, particularly in brain tumor classification, showcasing a notable increase in overall accuracy through the integration of synthetic GAN data on the used datasets.</p>","PeriodicalId":3,"journal":{"name":"ACS Applied Electronic Materials","volume":null,"pages":null},"PeriodicalIF":4.3000,"publicationDate":"2024-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11450983/pdf/","citationCount":"0","resultStr":"{\"title\":\"Development of brain tumor radiogenomic classification using GAN-based augmentation of MRI slices in the newly released gazi brains dataset.\",\"authors\":\"M M Enes Yurtsever, Yilmaz Atay, Bilgehan Arslan, Seref Sagiroglu\",\"doi\":\"10.1186/s12911-024-02699-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Significant progress has been made recently with the contribution of technological advances in studies on brain cancer. Regarding this, identifying and correctly classifying tumors is a crucial task in the field of medical imaging. The disease-related tumor classification problem, on which deep learning technologies have also become a focus, is very important in the diagnosis and treatment of the disease. The use of deep learning models has shown promising results in recent years. However, the sparsity of ground truth data in medical imaging or inconsistent data sources poses a significant challenge for training these models. The utilization of StyleGANv2-ADA is proposed in this paper for augmenting brain MRI slices to enhance the performance of deep learning models. Specifically, augmentation is applied solely to the training data to prevent any potential leakage. The StyleGanv2-ADA model is trained with the Gazi Brains 2020, BRaTS 2021, and Br35h datasets using the researchers' default settings. The effectiveness of the proposed method is demonstrated on datasets for brain tumor classification, resulting in a notable improvement in the overall accuracy of the model for brain tumor classification on all the Gazi Brains 2020, BraTS 2021, and Br35h datasets. Importantly, the utilization of StyleGANv2-ADA on the Gazi Brains 2020 Dataset represents a novel experiment in the literature. The results show that the augmentation with StyleGAN can help overcome the challenges of working with medical data and the sparsity of ground truth data. Data augmentation employing the StyleGANv2-ADA GAN model yielded the highest overall accuracy for brain tumor classification on the BraTS 2021 and Gazi Brains 2020 datasets, together with the BR35H dataset, achieving 75.18%, 99.36%, and 98.99% on the EfficientNetV2S models, respectively. 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引用次数: 0
摘要
最近,脑癌研究取得了重大进展,技术进步功不可没。在这方面,识别肿瘤并对其进行正确分类是医学成像领域的一项重要任务。与疾病相关的肿瘤分类问题在疾病的诊断和治疗中非常重要,而深度学习技术也已成为这一问题的焦点。近年来,深度学习模型的应用取得了可喜的成果。然而,医学影像中地面实况数据的稀缺性或数据源的不一致性给这些模型的训练带来了巨大挑战。本文提出利用 StyleGANv2-ADA 来增强脑部 MRI 切片,从而提高深度学习模型的性能。具体来说,增强仅应用于训练数据,以防止任何潜在的泄漏。研究人员使用 Gazi Brains 2020、BRaTS 2021 和 Br35h 数据集对 StyleGanv2-ADA 模型进行了默认设置训练。研究人员在脑肿瘤分类数据集上展示了所提方法的有效性,结果表明,该模型在所有 Gazi Brains 2020、BraTS 2021 和 Br35h 数据集上进行脑肿瘤分类的整体准确率都有显著提高。重要的是,在 Gazi Brains 2020 数据集上使用 StyleGANv2-ADA 是文献中的一项新实验。结果表明,使用 StyleGAN 进行扩增有助于克服处理医疗数据和地面实况数据稀少的挑战。在 BraTS 2021 和 Gazi Brains 2020 数据集以及 BR35H 数据集上,使用 StyleGANv2-ADA GAN 模型进行数据增强后,脑肿瘤分类的总体准确率最高,在 EfficientNetV2S 模型上分别达到 75.18%、99.36% 和 98.99%。这项研究强调了 GAN 在增强医学影像数据集方面的潜力,尤其是在脑肿瘤分类方面,通过在所用数据集上集成合成 GAN 数据,显著提高了总体准确率。
Development of brain tumor radiogenomic classification using GAN-based augmentation of MRI slices in the newly released gazi brains dataset.
Significant progress has been made recently with the contribution of technological advances in studies on brain cancer. Regarding this, identifying and correctly classifying tumors is a crucial task in the field of medical imaging. The disease-related tumor classification problem, on which deep learning technologies have also become a focus, is very important in the diagnosis and treatment of the disease. The use of deep learning models has shown promising results in recent years. However, the sparsity of ground truth data in medical imaging or inconsistent data sources poses a significant challenge for training these models. The utilization of StyleGANv2-ADA is proposed in this paper for augmenting brain MRI slices to enhance the performance of deep learning models. Specifically, augmentation is applied solely to the training data to prevent any potential leakage. The StyleGanv2-ADA model is trained with the Gazi Brains 2020, BRaTS 2021, and Br35h datasets using the researchers' default settings. The effectiveness of the proposed method is demonstrated on datasets for brain tumor classification, resulting in a notable improvement in the overall accuracy of the model for brain tumor classification on all the Gazi Brains 2020, BraTS 2021, and Br35h datasets. Importantly, the utilization of StyleGANv2-ADA on the Gazi Brains 2020 Dataset represents a novel experiment in the literature. The results show that the augmentation with StyleGAN can help overcome the challenges of working with medical data and the sparsity of ground truth data. Data augmentation employing the StyleGANv2-ADA GAN model yielded the highest overall accuracy for brain tumor classification on the BraTS 2021 and Gazi Brains 2020 datasets, together with the BR35H dataset, achieving 75.18%, 99.36%, and 98.99% on the EfficientNetV2S models, respectively. This study emphasizes the potency of GANs for augmenting medical imaging datasets, particularly in brain tumor classification, showcasing a notable increase in overall accuracy through the integration of synthetic GAN data on the used datasets.