Qiuping Liu, Qin Song, Yan Yu, Yiming Shi, Minghui Lu, Yan Chen, Leitao Tan
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引用次数: 0
摘要
具有极高观赏价值和药用价值的兰科植物菖蒲（Calanthe discolor）主要分布于中国浙江、江苏、湖北东南部，以及日本和朝鲜半岛南部。本研究首次利用高通量 Illumina 成对端技术组装了变色龙叶绿体全基因组序列，为评估该物种的进化提供了数据。C. discolor叶绿体基因组长158286 bp，包括一个大的单拷贝区（87095 bp）、一个小的单拷贝区（18407 bp）和两个重复区拷贝（各26392 bp）。总的 G + C 含量为 41.2%。该基因组共预测出 133 个基因，包括 87 个蛋白质编码基因、8 个核糖体 RNA 和 38 个转移 RNA。系统进化分析表明，C. discolor 与 C. bicolor 关系密切。
Whole chloroplast genome sequence and phylogenetic analysis of Calanthe discolor (Orchidaceae).
The orchid Calanthe discolor, which has high ornamental and medicinal value, is mainly distributed in Zhejiang, Jiangsu, and southeast Hubei Provinces of China, as well as in Japan and the southern Korean peninsula. In this study, the whole chloroplast genome sequence of C. discolor was first assembled using high-throughput Illumina paired-end technology, providing data to evaluate the evolution of this species. The C. discolor chloroplast genome was158,286 bp long, including a large single-copy region of 87,095 bp, a small single-copy region of 18,407 bp, and two copies of a repeat region (26,392-bp each). The overall G + C content was 41.2%. A total of 133 genes were predicted from the genome, including 87 protein-coding genes, eight ribosomal RNAs, 38 transfer RNAs. Phylogenetic analysis indicated a close relationship between C. discolor and C. bicolor.
期刊介绍：
This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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