作为抗癌药物的 VEGFR-2 抑制剂的计算机辅助设计:综述。

IF 2.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Recognition Pub Date : 2024-10-10 DOI:10.1002/jmr.3104
Abdullahi Ibrahim Uba
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引用次数: 0

摘要

血管内皮生长因子受体 2(VEGFR-2)具有错综复杂的分子和结构特征,在各种病理过程和条件下,尤其是在癌症中,它对新血管的发育至关重要。血管内皮生长因子受体 2 抑制剂通过阻断与肿瘤生长、转移和血管生成有关的多种信号通路,显示出显著的抗癌效果。包括耐受性良好的舒尼替尼和索拉非尼在内的几种小分子化合物已被批准为 VEGFR-2 抑制剂。然而,这些 VEGFR-2 抑制剂普遍存在副作用--高血压、鼻衄、蛋白尿和上呼吸道感染,这促使研究人员寻找药代动力学特征更好的新型 VEGFR-2 抑制剂。利用计算机辅助药物设计(CADD)方法,如药理和 QSAR 建模、基于结构的虚拟筛选、分子对接、分子动力学(MD)模拟与 MM/PB(GB)SA,以及其他计算策略,可以确定小分子与蛋白质靶点相互作用产生预期药理效应所需的关键分子相互作用。本综述讨论了这些方法在 VEGFR-2 抑制剂设计中的应用。未来的 VEGFR-2 抑制剂设计可能会受到本综述的影响,本综述侧重于当前使用多重筛选层来设计更好的抑制剂的趋势。
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Computer-Aided Design of VEGFR-2 Inhibitors as Anticancer Agents: A Review.

Due to its intricate molecular and structural characteristics, vascular endothelial growth factor receptor 2 (VEGFR-2) is essential for the development of new blood vessels in various pathological processes and conditions, especially in cancers. VEGFR-2 inhibitors have demonstrated significant anticancer effects by blocking many signaling pathways linked to tumor growth, metastasis, and angiogenesis. Several small compounds, including the well-tolerated sunitinib and sorafenib, have been approved as VEGFR-2 inhibitors. However, the widespread side effects linked to these VEGFR-2 inhibitors-hypertension, epistaxis, proteinuria, and upper respiratory infection-motivate researchers to search for new VEGFR-2 inhibitors with better pharmacokinetic profiles. The key molecular interactions required for the interaction of the small molecules with the protein target to produce the desired pharmacological effects are identified using computer-aided drug design (CADD) methods such as pharmacophore and QSAR modeling, structure-based virtual screening, molecular docking, molecular dynamics (MD) simulation coupled with MM/PB(GB)SA, and other computational strategies. This review discusses the applications of these methods for VEGFR-2 inhibitor design. Future VEGFR-2 inhibitor designs may be influenced by this review, which focuses on the current trends of using multiple screening layers to design better inhibitors.

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来源期刊
Journal of Molecular Recognition
Journal of Molecular Recognition 生物-生化与分子生物学
CiteScore
4.60
自引率
3.70%
发文量
68
审稿时长
2.7 months
期刊介绍: Journal of Molecular Recognition (JMR) publishes original research papers and reviews describing substantial advances in our understanding of molecular recognition phenomena in life sciences, covering all aspects from biochemistry, molecular biology, medicine, and biophysics. The research may employ experimental, theoretical and/or computational approaches. The focus of the journal is on recognition phenomena involving biomolecules and their biological / biochemical partners rather than on the recognition of metal ions or inorganic compounds. Molecular recognition involves non-covalent specific interactions between two or more biological molecules, molecular aggregates, cellular modules or organelles, as exemplified by receptor-ligand, antigen-antibody, nucleic acid-protein, sugar-lectin, to mention just a few of the possible interactions. The journal invites manuscripts that aim to achieve a complete description of molecular recognition mechanisms between well-characterized biomolecules in terms of structure, dynamics and biological activity. Such studies may help the future development of new drugs and vaccines, although the experimental testing of new drugs and vaccines falls outside the scope of the journal. Manuscripts that describe the application of standard approaches and techniques to design or model new molecular entities or to describe interactions between biomolecules, but do not provide new insights into molecular recognition processes will not be considered. Similarly, manuscripts involving biomolecules uncharacterized at the sequence level (e.g. calf thymus DNA) will not be considered.
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