提高热休克蛋白 47 晶体的衍射质量。

IF 1.1 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Acta crystallographica. Section F, Structural biology communications Pub Date : 2024-10-14 DOI:10.1107/S2053230X24009233
Kevin Kish, Stephen Cobell, Nicolas Szapiel, Chunhong Yan, John A. Newitt, Jeffrey Tredup, Iyoncy Rodrigo, Elizabeth Tomasco, Mian Gao, Frank Marsilio, John Haugner, Dasa Lipovšek, Bi Deng, Patrick Bousquet, Yihong Zhang, Holly Schmidt, Steven Sheriff
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引用次数: 0

摘要

热休克蛋白 47(HSP47)是抑制剂的潜在靶点,抑制剂可通过减少胶原组装来改善纤维化。在开发基于结构的药物设计系统的过程中,我们无法复制之前文献中关于 apo dog HSP47 的结果(PDB 条目 4au4);相反,我们获得了一些晶体形式,其中成对的 dog HSP47 分子通过不可清除的 C 端 His-tag 相互作用,形成了四聚体,所有这些四聚体的不对称单元中都有多个 HSP47 分子,而且它们的衍射效果都不如文献中的先例。为了克服这些困难,我们采取了双管齐下的方法:(i) 将 His 标记从 C 端移至 N 端,并使其可裂解;(ii) 开发了 Adnectin(源自人类 III 型纤连蛋白的第十个结构域)结晶伴侣。这两种方法都能得到衍射良好的晶体,但后一种方法得到的晶体形式每个不对称单元只有一个或两个 HSP47 复合物,因此建立模型的难度较小。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Improving the diffraction quality of heat-shock protein 47 crystals

Heat-shock protein 47 (HSP47) is a potential target for inhibitors that ameliorate fibrosis by reducing collagen assembly. In an effort to develop a structure-based drug-design system, it was not possible to replicate a previous literature result (PDB entry 4au4) for apo dog HSP47; instead, crystal forms were obtained in which pairs of dog HSP47 molecules interacted through a noncleavable C-terminal His-tag to build up tetramers, all of which had multiple molecules of HSP47 in the asymmetric unit and none of which diffracted as well as the literature precedent. To overcome these difficulties, a two-pronged approach was followed: (i) the His-tag was moved from the C-terminus to the N-terminus and was made cleavable, and (ii) Adnectin (derived from the tenth domain of human fibronectin type III) crystallization chaperones were developed. Both approaches provided well diffracting crystals, but the latter approach yielded crystal forms with only one or two HSP47 complexes per asymmetric unit, which made model building less onerous.

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来源期刊
Acta crystallographica. Section F, Structural biology communications
Acta crystallographica. Section F, Structural biology communications BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.90
自引率
0.00%
发文量
95
期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
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