向日葵中 GASA 基因的全面鉴定以及对干旱反应的表达谱分析。

IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY BMC Genomics Pub Date : 2024-10-14 DOI:10.1186/s12864-024-10860-8
Muhammad Asad Ullah, Muhammad Awais Ahmed, Latifa AlHusnain, Muhammad Abu Bakar Zia, Muneera D F AlKahtani, Kotb A Attia, Mohammed Hawash
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引用次数: 0

摘要

干旱胁迫对全球作物产量和可持续农业构成严重威胁。GASA 基因在胁迫耐受性和植物生长中发挥着关键作用,但人们对它们在向日葵中的功能知之甚少。这项研究旨在鉴定和阐明 HaGASA 基因在赋予向日葵耐旱性方面的作用。这项研究发现了 27 个不同的 HaGASA 基因家族成员,它们在 11 条向日葵染色体上的位置并不一致。系统进化分析表明,通过将向日葵的 HaGASA 基因与拟南芥、花生和大豆的 GASA 基因进行比较,向日葵的 HaGASA 基因被分为五个亚群,每个亚群中的成员都具有相似的保守基序和基因结构。对顺式调控元件的内部评估表明,与胁迫响应相关的特定元件最多,其次是激素、光和生长响应元件。利用 NCBI 数据库中的转录组数据评估了不同向日葵品种在干旱条件下的 HaGASA 基因表达谱。干旱胁迫条件下 10 个向日葵基因型的 HaGASA 基因表达情况显示,有 14 个 HaGASA 基因有差异表达,这意味着它们在植物的胁迫响应中发挥了积极作用。在不同器官中的表达显示,HaGASA2、HaGASA11、HaGASA17、HaGASA19、HaGASA21 和 HaGASA26 在茎中的表达量最大。我们的研究结果表明,HaGASA 基因介导向日葵的生长维持和对非生物胁迫(尤其是干旱)的适应。综合上述研究结果,我们对 HaGASA 基因的结构和潜在功能有了基本的了解,为进一步研究其在缓解干旱胁迫和作物改良战略中的作用奠定了基础。
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Comprehensive identification of GASA genes in sunflower and expression profiling in response to drought.

Drought stress poses a critical threat to global crop yields and sustainable agriculture. The GASA genes are recognized for their pivotal role in stress tolerance and plant growth, but little is known about how they function in sunflowers. The investigation aimed to identify and elucidate the role of HaGASA genes in conferring sunflowers with drought tolerance. Twenty-seven different HaGASA gene family members were found in this study that were inconsistently located across eleven sunflower chromosomes. Phylogeny analysis revealed that the sunflower HaGASA genes were divided into five subgroups by comparing GASA genes with those from Arabidopsis, peanut, and soybean, with members within each subgroup displaying similar conserved motifs and gene structures. In-silico evaluation of cis-regulatory elements indicated the existence of specific elements associated with stress-responsiveness being the most abundant, followed by hormone, light, and growth-responsive elements. Transcriptomic data from the NCBI database was utilized to assess the HaGASA genes expression profile in different sunflower varieties under drought conditions. The HaGASA genes expression across ten sunflower genotypes under drought stress, revealed 14 differentially expressed HaGASA genes, implying their active role in the plant's stress response. The expression in different organs revealed that HaGASA2, HaGASA11, HaGASA17, HaGASA19, HaGASA21 and HaGASA26 displayed maximum expression in the stem. Our findings implicate HaGASA genes in mediating sunflower growth maintenance and adaptation to abiotic stress, particularly drought. The findings, taken together, provided a basic understanding of the structure and potential functions of HaGASA genes, setting the framework for further functional investigations into their roles in drought stress mitigation and crop improvement strategies.

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来源期刊
BMC Genomics
BMC Genomics 生物-生物工程与应用微生物
CiteScore
7.40
自引率
4.50%
发文量
769
审稿时长
6.4 months
期刊介绍: BMC Genomics is an open access, peer-reviewed journal that considers articles on all aspects of genome-scale analysis, functional genomics, and proteomics. BMC Genomics is part of the BMC series which publishes subject-specific journals focused on the needs of individual research communities across all areas of biology and medicine. We offer an efficient, fair and friendly peer review service, and are committed to publishing all sound science, provided that there is some advance in knowledge presented by the work.
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