氧化还原金属酶中的蛋白质震荡:结合小分子底物触发分子酶传导性的线索。

IF 2.5 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY ChemistryOpen Pub Date : 2024-10-30 DOI:10.1002/open.202400190
Henrik Bohr, Irene Shim, Jens Ulstrup, Xinxin Xiao
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引用次数: 0

摘要

多中心氧化还原金属蛋白在电化学表面或与酶底物结合时会发生构象变化。双中心铜酶、漆酶(I 型和 II/III 型铜)和亚硝酸盐还原酶(CuNIR)(I 型和 II 型铜)就是例子。除个别情况外,这些酶在经硫醇基自组装分子单层修饰的 Au(111)表面上没有显示出非翻转伏安特性,但二氧或亚硝酸盐底物会引发强烈的电催化信号。扫描隧道显微镜也显示,只有存在二氧或亚硝酸盐时才会产生高电导率。原子力显微镜显示,铜近红外高度不变,但在亚硝酸盐结合时,电催化范围内的结构明显扩展。我们最近根据对 740 个原子的 CuNIR 片段中水/亚硝酸盐置换的 ab initio 量子化学研究提出了一个理由。现在,我们提供了更详细的结构分配图,其分辨率达到了单残基。二氧化氮的结合导致 2 Å 的铜-铜距离增加,以及明显的前沿轨道脱位,这极大地促进了铜区域之间的 ET。构象变化通过 His129-Cys130 配体从 II 型催化中心传递到 I 型电子入口中心,并通过 I 型-Cys130 或 I 型-His129 传递到 II 型 Asp92。ET 模式反映在水和亚硝酸盐 CuNIR 片段中不同的 Mulliken 原子电荷上。
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Protein Quakes in Redox Metalloenzymes: Clues to Molecular Enzyme Conductivity Triggered by Binding of Small Substrate Molecules.

Multicentre redox metalloproteins undergo conformational changes on electrochemical surfaces, or on enzyme substrate binding. The two-centre copper enzymes, laccase (Type I and TypeII/III Cu) and nitrite reductase (CuNIR) (Type I and Type II Cu) are examples. With some exceptions, these enzymes show no non-turnover voltammetry on Au(111)-surfaces modified by thiol based self-assembled molecular monolayers, but dioxygen or nitrite substrate triggers strong electrocatalytic signals. Scanning tunnelling microscopy also shows high conductivity only when dioxygen or nitrite is present. Atomic force microscopy shows constant CuNIR height but pronounced structural expansion in the electrocatalytic range on nitrite binding. We have recently offered a rationale, based on ab initio quantum chemical studies of water/nitrite substitution in a 740-atom CuNIR fragment. Presently we provide much more detailed structural assignment mapped to single-residue resolution. NO2 --binding induces both a 2 Å Cu-Cu distance increase, and pronounced frontier orbital delocalization strongly facilitating ET between the Cu regions. The conformational changes transmit from the catalytic Type II centre to the electron inlet Type I centre, via the His129-Cys130 ligands, and via Type I-Cys130 or Type I-His129 ending at Type II Asp92. The ET patterns are reflected in different atomic Mulliken charges in the water and nitrite CuNIR fragment.

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来源期刊
ChemistryOpen
ChemistryOpen CHEMISTRY, MULTIDISCIPLINARY-
CiteScore
4.80
自引率
4.30%
发文量
143
审稿时长
1 months
期刊介绍: ChemistryOpen is a multidisciplinary, gold-road open-access, international forum for the publication of outstanding Reviews, Full Papers, and Communications from all areas of chemistry and related fields. It is co-owned by 16 continental European Chemical Societies, who have banded together in the alliance called ChemPubSoc Europe for the purpose of publishing high-quality journals in the field of chemistry and its border disciplines. As some of the governments of the countries represented in ChemPubSoc Europe have strongly recommended that the research conducted with their funding is freely accessible for all readers (Open Access), ChemPubSoc Europe was concerned that no journal for which the ethical standards were monitored by a chemical society was available for such papers. ChemistryOpen fills this gap.
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