Emadeldin M Kamel, Saleh Maodaa, Esam M Al-Shaebi, Al Mokhtar Lamsabhi
In this study, we aimed to investigate the inhibitory mechanisms of β-glucuronidase by flavonoids derived from Alhagi graecorum through both experimental and computational approaches. The activity of β-glucuronidase was assessed using an in vitro enzyme inhibition assay, where myricetin and chrysoeriol were identified as potent inhibitors based on their low IC50 values. Kinetic studies were conducted to determine the inhibition type, revealing that both compounds exhibit noncompetitive inhibition of β-glucuronidase-catalyzed hydrolysis of PNPG. Molecular docking was employed to explore the binding affinities of the flavonoids, showing that myricetin formed the highest number of polar interactions with the enzyme. Additionally, molecular dynamics (MD) simulations were performed to evaluate the stability of the enzyme-inhibitor complexes, demonstrating consistent trajectory behavior for both compounds, with significant energy stabilization. Interaction energy analyses highlighted the dominant role of electrostatic forces in myricetin's inhibition mechanism, while Van der Waals forces were more prominent for chrysoeriol. The MM/PBSA method was used to calculate the binding free energies, with myricetin and chrysoeriol exhibiting the lowest values. Potential energy landscape analysis further revealed that β-glucuronidase adopts a more closed conformation when bound to these inhibitors, limiting substrate access. These findings suggest that flavonoids from Alhagi graecorum hold promise for clinical applications, particularly in managing drug-induced enteropathy.
{"title":"Molecular Insights Into β-Glucuronidase Inhibition by Alhagi Graecorum Flavonoids: A Computational and Experimental Approach.","authors":"Emadeldin M Kamel, Saleh Maodaa, Esam M Al-Shaebi, Al Mokhtar Lamsabhi","doi":"10.1002/open.202400325","DOIUrl":"https://doi.org/10.1002/open.202400325","url":null,"abstract":"<p><p>In this study, we aimed to investigate the inhibitory mechanisms of β-glucuronidase by flavonoids derived from Alhagi graecorum through both experimental and computational approaches. The activity of β-glucuronidase was assessed using an in vitro enzyme inhibition assay, where myricetin and chrysoeriol were identified as potent inhibitors based on their low IC<sub>50</sub> values. Kinetic studies were conducted to determine the inhibition type, revealing that both compounds exhibit noncompetitive inhibition of β-glucuronidase-catalyzed hydrolysis of PNPG. Molecular docking was employed to explore the binding affinities of the flavonoids, showing that myricetin formed the highest number of polar interactions with the enzyme. Additionally, molecular dynamics (MD) simulations were performed to evaluate the stability of the enzyme-inhibitor complexes, demonstrating consistent trajectory behavior for both compounds, with significant energy stabilization. Interaction energy analyses highlighted the dominant role of electrostatic forces in myricetin's inhibition mechanism, while Van der Waals forces were more prominent for chrysoeriol. The MM/PBSA method was used to calculate the binding free energies, with myricetin and chrysoeriol exhibiting the lowest values. Potential energy landscape analysis further revealed that β-glucuronidase adopts a more closed conformation when bound to these inhibitors, limiting substrate access. These findings suggest that flavonoids from Alhagi graecorum hold promise for clinical applications, particularly in managing drug-induced enteropathy.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202400325"},"PeriodicalIF":2.5,"publicationDate":"2024-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142674992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study has provided new insights into the interaction between graphene and DNA nucleobases (adenine, cytosine, and guanine). It compares how each nucleobase interacts with graphene, examining their selectivity and binding energy. The research also explores how these interactions impact the electronic properties of graphene, showing potential applications in graphene-based biosensors and DNA sequencing technologies. Additionally, the findings suggest potential uses in DNA sensing and the functionalization of graphene for various biomedical applications. This study employs density functional theory (DFT) methods, utilizing the B3LYP functional with the 6-311G basis set, to explore the electronic interactions between DNA nucleobases (adenine, cytosine, and guanine) with pure graphene (Gr). We investigate various properties, including adsorption energy, HOMO-LUMO energy levels, charge transfer mechanisms, dipole moments, energy gaps, and density of states (DOS). Our findings indicate that cytosine interacts most favorably with graphene through its oxygen site (Gr-Cyt-O), exhibiting the strongest adsorption. Additionally, adenine's interaction significantly enhances its electronegativity and chemical potential, particularly at the nitrogen position, while decreasing its electrophilicity. Guanine, characterized by the smallest energy gap, demonstrates the highest conductivity among the nucleobases. These results suggest that graphene possesses advantageous properties as an adsorbent for guanine, highlighting its potential applications in biosensor technology.
这项研究为石墨烯与 DNA 核碱基(腺嘌呤、胞嘧啶和鸟嘌呤)之间的相互作用提供了新的见解。研究比较了每种核碱基与石墨烯的相互作用,考察了它们的选择性和结合能。研究还探讨了这些相互作用如何影响石墨烯的电子特性,显示了基于石墨烯的生物传感器和 DNA 测序技术的潜在应用。此外,研究结果还提出了 DNA 传感和石墨烯功能化在各种生物医学应用中的潜在用途。本研究采用密度泛函理论(DFT)方法,利用具有 6-311G 基集的 B3LYP 函数,探索 DNA 核碱基(腺嘌呤、胞嘧啶和鸟嘌呤)与纯石墨烯(Gr)之间的电子相互作用。我们研究了各种特性,包括吸附能、HOMO-LUMO 能级、电荷转移机制、偶极矩、能隙和状态密度 (DOS)。我们的研究结果表明,胞嘧啶通过其氧位点(Gr-Cyt-O)与石墨烯产生最有利的相互作用,表现出最强的吸附性。此外,腺嘌呤的相互作用显著增强了其电负性和化学势,尤其是在氮位,同时降低了其亲电性。鸟嘌呤的能隙最小,在核碱基中具有最高的导电性。这些结果表明,石墨烯作为鸟嘌呤的吸附剂具有优势特性,突出了其在生物传感器技术中的潜在应用。
{"title":"Exploring the Electronic Interactions of Adenine, Cytosine, and Guanine with Graphene: A DFT Study.","authors":"Jawaher Qasem, Baliram Lone","doi":"10.1002/open.202400350","DOIUrl":"https://doi.org/10.1002/open.202400350","url":null,"abstract":"<p><p>This study has provided new insights into the interaction between graphene and DNA nucleobases (adenine, cytosine, and guanine). It compares how each nucleobase interacts with graphene, examining their selectivity and binding energy. The research also explores how these interactions impact the electronic properties of graphene, showing potential applications in graphene-based biosensors and DNA sequencing technologies. Additionally, the findings suggest potential uses in DNA sensing and the functionalization of graphene for various biomedical applications. This study employs density functional theory (DFT) methods, utilizing the B3LYP functional with the 6-311G basis set, to explore the electronic interactions between DNA nucleobases (adenine, cytosine, and guanine) with pure graphene (Gr). We investigate various properties, including adsorption energy, HOMO-LUMO energy levels, charge transfer mechanisms, dipole moments, energy gaps, and density of states (DOS). Our findings indicate that cytosine interacts most favorably with graphene through its oxygen site (Gr-Cyt-O), exhibiting the strongest adsorption. Additionally, adenine's interaction significantly enhances its electronegativity and chemical potential, particularly at the nitrogen position, while decreasing its electrophilicity. Guanine, characterized by the smallest energy gap, demonstrates the highest conductivity among the nucleobases. These results suggest that graphene possesses advantageous properties as an adsorbent for guanine, highlighting its potential applications in biosensor technology.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202400350"},"PeriodicalIF":2.5,"publicationDate":"2024-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142674983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A simple two step synthetic method for di-doped crystalline mesoporous tin dioxide powder containing antimony and fluoride at ambient pressure and temperature has been developed. This approach produced materials with high surface areas and improved electrical and optoelectrical conductance. The two dopant elements; antimony and fluoride were introduced to tin dioxide by two approaches. Both approaches produced mesoporous tin dioxide with antimony and fluoride that are integrated in the framework. The structures of these materials are analyzed by powder X-ray diffraction, N2 sorption analysis, transmission electron microscopy, energy dispersive X-ray spectroscopy and X-ray photoelectron spectroscopy. The conductance of the materials improved by factor of 13-34 compared to undoped mesoporous tin dioxide. The effect of the di-doped elements on structure, conductance and optoelectronic properties of these materials are discussed in this paper.
我们开发了一种简单的两步合成法,可在常压常温下合成含有锑和氟化物的二掺杂结晶介孔二氧化锡粉末。这种方法制备出的材料具有高表面积和更好的导电性和光导性。锑和氟这两种掺杂元素是通过两种方法引入二氧化锡的。这两种方法都产生了与锑和氟化物结合在框架中的介孔二氧化锡。粉末 X 射线衍射、N2 吸附分析、透射电子显微镜、能量色散 X 射线光谱和 X 射线光电子能谱分析了这些材料的结构。与未掺杂的介孔二氧化锡相比,这些材料的电导率提高了 13-34 倍。本文讨论了二掺杂元素对这些材料的结构、电导率和光电特性的影响。
{"title":"A Facile Method to Incorporate Di-Dopant Elements (F and Sb) into Crystalline Mesoporous Tin Dioxide Nano Powder at Ambient Temperature and Pressure.","authors":"Tariq Aqeel, Heather F Greer","doi":"10.1002/open.202400096","DOIUrl":"https://doi.org/10.1002/open.202400096","url":null,"abstract":"<p><p>A simple two step synthetic method for di-doped crystalline mesoporous tin dioxide powder containing antimony and fluoride at ambient pressure and temperature has been developed. This approach produced materials with high surface areas and improved electrical and optoelectrical conductance. The two dopant elements; antimony and fluoride were introduced to tin dioxide by two approaches. Both approaches produced mesoporous tin dioxide with antimony and fluoride that are integrated in the framework. The structures of these materials are analyzed by powder X-ray diffraction, N<sub>2</sub> sorption analysis, transmission electron microscopy, energy dispersive X-ray spectroscopy and X-ray photoelectron spectroscopy. The conductance of the materials improved by factor of 13-34 compared to undoped mesoporous tin dioxide. The effect of the di-doped elements on structure, conductance and optoelectronic properties of these materials are discussed in this paper.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202400096"},"PeriodicalIF":2.5,"publicationDate":"2024-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142643781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mohsen Monirialamdari, Aleksandra Podlaska, Dominika Pomikło, Anna Albrecht
Electrochemically induced, decarboxylative functionalization of chromone-3-carboxylic acids by N-hydroxyphthalimide esters as alkyl radical precursors was studied. Electrochemical protocol offers a sustainable and green approach, obviating the need for catalysts, relying on the direct reduction of NHPI esters using electric current. Developed protocol provides a straightforward route to the synthesis of diverse molecules with potential biological activity.
{"title":"Electrochemically Induced, Metal Free Synthesis of 2-substituted chroman-4-ones.","authors":"Mohsen Monirialamdari, Aleksandra Podlaska, Dominika Pomikło, Anna Albrecht","doi":"10.1002/open.202400395","DOIUrl":"https://doi.org/10.1002/open.202400395","url":null,"abstract":"<p><p>Electrochemically induced, decarboxylative functionalization of chromone-3-carboxylic acids by N-hydroxyphthalimide esters as alkyl radical precursors was studied. Electrochemical protocol offers a sustainable and green approach, obviating the need for catalysts, relying on the direct reduction of NHPI esters using electric current. Developed protocol provides a straightforward route to the synthesis of diverse molecules with potential biological activity.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202400395"},"PeriodicalIF":2.5,"publicationDate":"2024-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142643782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ikuto Yoshiki, Prof. Atsushi Takagaki, Dr. Jun Tae Song, Prof. Motonori Watanabe, Prof. Tatsumi Ishihara
The Front Cover shows selective production of formic acid from cellobiose, a disaccharide from cellulose, using solid base catalysts in the presence of hydrogen peroxide as an environmentally benign oxidizing agent. Calcium oxide and magnesium oxide are found to afford formic acid at 343 K for 2 h. A combination of Amberlyst-15 as a solid acid and MgO as a solid base allows for a high formic acid yield of 33% under mild reaction conditions. More information can be found in the Research Article by Atsushi Takagaki, Tatsumi Ishihara, and co-workers (DOI: 10.1002/open.202400079).