从西南印度洋深海热液沉积物中分离出的海洋外多糖生产细菌 Vreelandella sp.

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2024-11-02 DOI:10.1016/j.margen.2024.101150
Hai-Xia Zhu , Zhi-Gang Tang , Shi-Ning Cai , Jun-Hui Cheng , Peng Wang , Mei-Ling Sun
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引用次数: 0

摘要

本研究分析了菌株SM1641的完整基因组序列,以了解其代谢能力和天然产物的生物合成潜力。菌株 SM1641 的基因组由一个环状染色体和两个质粒组成。环状染色体的长度为 4,731,121 bp,GC 含量为 54.46 mol%;质粒 A 的长度为 302,095 bp,GC 含量为 54.95 mol%;质粒 B 的长度为 8857 bp,GC 含量为 46.31 mol%。基因组数据显示,菌株 SM1641 有多个基因簇参与外多糖(EPSs)的合成和聚羟基烷酸酯(PHAs)的合成。此外,SM1641 还具有多种对渗透胁迫、热休克、冷休克、氧化胁迫和重金属胁迫做出反应的基因,这在细菌适应热液环境中起着至关重要的作用。因此,对菌株SM1641进行基因组测序和数据挖掘,有助于进一步了解Vreelandella适应深海热液环境的分子机制,为进一步的实验探索提供依据。
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Complete genome sequence of Vreelandella sp. SM1641, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Southwest Indian Ocean
Vreelandella sp. SM1641 was isolated from the hydrothermal vent sediment of the southwest Indian Ocean at a water depth of 2519 m. The complete genome sequence of strain SM1641 was analyzed to understand its metabolic capacities and biosynthesis potential of natural products in this study. The genome of strain SM1641 consists of a circular chromosome and two plasmids. The length of the circular chromosome was 4,731,121 bp with GC content of 54.46 mol%, and the length of plasmid A was 302,095 bp with GC content of 54.95 mol%, and the length of plasmid B was 8857 bp with GC content of 46.31 mol%. Genomic data showed that strain SM1641 had several gene clusters involved in the synthesis of exopolysaccharides (EPSs) and polyhydroxyalkanoates (PHAs) synthesis. SM1641 also has a variety of genes that respond to osmotic stress, heat shock, cold shock, oxidative stress, and heavy metal stress, which plays a critical role in bacterial adaptation to hydrothermal environments. Therefore, genome sequencing and data mining of strain SM1641 are helpful to further understand the molecular mechanism of Vreelandella adapting to the deep-sea hydrothermal environment, and provide a basis for further experimental exploration.
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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
期刊最新文献
A glimpse of microbial potential in metal metabolism in the Clarion-Clipperton Fracture Zone in the eastern Pacific Ocean based on metagenomic analysis. Editorial Board Complete genome sequence of Sulfitobacter pontiacus WPMT18310, a dimethylsulfoniopropionate (DMSP) degradation bacterium isolated from the Mariana Trench Complete genome sequence of Vreelandella sp. SM1641, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Southwest Indian Ocean Complete genome and carbohydrate-active enzymes of Arenibacter antarcticus KCTC 52924T isolated from deep sea sediment of Ross Sea, Antarctica
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