声子揭示了三元膜中胆固醇-脂质的耦合动力学。

IF 3.2 3区 生物学 Q2 BIOPHYSICS Biophysical journal Pub Date : 2024-11-05 DOI:10.1016/j.bpj.2024.10.017
James E Fitzgerald, Dmytro Soloviov, Yong Q Cai, Frederick A Heberle, Daisuke Ishikawa, Alfred Q R Baron, Dima Bolmatov, Mikhail Zhernenkov, Edward R Lyman
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引用次数: 0

摘要

由于观察这些低能声子样模式所需的能量分辨率,对脂质双层膜中集体动力学的实验研究一直具有挑战性。然而,非弹性 X 射线散射(IXS)测量--一种探测软材料和生物材料振动的技术--现在可以达到亚兆赫分辨率,从而可以直接观察脂质膜中的低能声子样模式。在这里,亚兆伏能量分辨率的 IXS 测量揭示了三元脂质混合物中液态有序(Lo)和液态无序(Ld)相在大约 3 meV 处的低能光学样声子模式。在实验中,只有在动量传递大于 5 nm-1 的(Lo)体系中才能观测到这种模式。在同一混合物的全原子分子动力学(MD)模拟中也观察到了类似的间隙模式,这表明模拟准确地反映了(Lo)相中的快速集体动力学。它的光学性质和间隙的 Q 值范围共同表明,所观察到的模式是由膜平面内被几条碳氢链隔开的胆固醇-脂质对的耦合运动引起的。模拟分析从分子角度揭示了该模式起源于瞬时、纳米级的六角形碳氢链子结构。这种纳米级的六角形堆积以前是根据分子动力学模拟和后来的核磁共振测量报告的。然而,由于最近 IXS 灵敏度和 MD 模拟能力的结合,IXS 和 MD 模拟在脂质集体动力学中发现了 L° 子结构的新特征。
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Phonons reveal coupled cholesterol-lipid dynamics in ternary membranes.

Experimental studies of collective dynamics in lipid bilayers have been challenging due to the energy resolution required to observe these low-energy phonon-like modes. However, inelastic x-ray scattering (IXS) measurements-a technique for probing vibrations in soft and biological materials-are now possible with sub-meV resolution, permitting direct observation of low-energy, phonon-like modes in lipid membranes. Here, IXS measurements with sub-meV energy resolution reveal a low-energy optic-like phonon mode at roughly 3 meV in the liquid-ordered (Lo) and liquid-disordered phases of a ternary lipid mixture. This mode is only observed experimentally at momentum transfers greater than 5 nm-1 in the Lo system. A similar gapped mode is also observed in all-atom molecular dynamics (MD) simulations of the same mixture, indicating that the simulations accurately represent the fast, collective dynamics in the Lo phase. Its optical nature and the Q range of the gap together suggest that the observed mode is due to the coupled motion of cholesterol-lipid pairs, separated by several hydrocarbon chains within the membrane plane. Analysis of the simulations provides molecular insight into the origin of the mode in transient, nanoscale substructures of hexagonally packed hydrocarbon chains. This nanoscale hexagonal packing was previously reported based on MD simulations and, later, by NMR measurements. Here, however, the integration of IXS and MD simulations identifies a new signature of the Lo substructure in the collective lipid dynamics, thanks to the recent confluence of IXS sensitivity and MD simulation capabilities.

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来源期刊
Biophysical journal
Biophysical journal 生物-生物物理
CiteScore
6.10
自引率
5.90%
发文量
3090
审稿时长
2 months
期刊介绍: BJ publishes original articles, letters, and perspectives on important problems in modern biophysics. The papers should be written so as to be of interest to a broad community of biophysicists. BJ welcomes experimental studies that employ quantitative physical approaches for the study of biological systems, including or spanning scales from molecule to whole organism. Experimental studies of a purely descriptive or phenomenological nature, with no theoretical or mechanistic underpinning, are not appropriate for publication in BJ. Theoretical studies should offer new insights into the understanding ofexperimental results or suggest new experimentally testable hypotheses. Articles reporting significant methodological or technological advances, which have potential to open new areas of biophysical investigation, are also suitable for publication in BJ. Papers describing improvements in accuracy or speed of existing methods or extra detail within methods described previously are not suitable for BJ.
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