{"title":"基于深度学习的计算机断层扫描尿路造影图像分析用于预测膀胱癌的 HER2 状态。","authors":"Panpan Jiao, Rui Yang, Yunxun Liu, Shujie Fu, Xiaodong Weng, Zhiyuan Chen, Xiuheng Liu, Qingyuan Zheng","doi":"10.7150/jca.101296","DOIUrl":null,"url":null,"abstract":"<p><p><b>Purpose:</b> Bladder cancer (BCa) is one of the most common malignant tumors in the urinary system. BCa with HER2 overexpression can benefit from more precise treatments, but HER2 testing is costly and subjective. This study aimed to detect HER2 expression using computed tomography urography (CTU) images. <b>Method:</b> We gathered CTU images from 97 patients with BCa during the excretion phase in Renmin Hospital of Wuhan University, manually delineated the BCa regions, extracted radiomic features using the Pyradiomics package, conducted data dimensionality reduction via principal component analysis (PCA), and trained three models (Logistic Regression [LR], Random Forest [RF] and Multilayer Perceptron [MLP]) to discern the HER2 expression status. <b>Results:</b> Pyradiomics package was used to extract 975 radiological features and the cumulative interpretation area under the variance curve was 90.964 by PCA. Using an MLP-based deep learning model for identifying HER2 overexpression, the area under the curve (AUC) reached 0.79 (95% confidence interval [CI] 0.74-0.86) in the training set and 0.73 (95% CI 0.66-0.77) in the validation set. LR and RF had AUC of 0.69 (95% CI 0.63-0.75) and 0.66 (95% CI 0.61-0.70) in the training set and 0.61 (95% CI 0.55-0.67) and 0.59 (95% CI 0.55-0.63) in the test set, respectively. <b>Conclusion:</b> The study firstly presents a non-invasive method for identifying and detecting HER2 expression in BCa CTU images. It might not only reduce the cost and subjectivity of traditional HER2 testing but also provide a new technical method for the precise treatment of BCa.</p>","PeriodicalId":3,"journal":{"name":"ACS Applied Electronic Materials","volume":null,"pages":null},"PeriodicalIF":4.3000,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11540498/pdf/","citationCount":"0","resultStr":"{\"title\":\"Deep learning-based computed tomography urography image analysis for prediction of HER2 status in bladder cancer.\",\"authors\":\"Panpan Jiao, Rui Yang, Yunxun Liu, Shujie Fu, Xiaodong Weng, Zhiyuan Chen, Xiuheng Liu, Qingyuan Zheng\",\"doi\":\"10.7150/jca.101296\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Purpose:</b> Bladder cancer (BCa) is one of the most common malignant tumors in the urinary system. BCa with HER2 overexpression can benefit from more precise treatments, but HER2 testing is costly and subjective. This study aimed to detect HER2 expression using computed tomography urography (CTU) images. <b>Method:</b> We gathered CTU images from 97 patients with BCa during the excretion phase in Renmin Hospital of Wuhan University, manually delineated the BCa regions, extracted radiomic features using the Pyradiomics package, conducted data dimensionality reduction via principal component analysis (PCA), and trained three models (Logistic Regression [LR], Random Forest [RF] and Multilayer Perceptron [MLP]) to discern the HER2 expression status. <b>Results:</b> Pyradiomics package was used to extract 975 radiological features and the cumulative interpretation area under the variance curve was 90.964 by PCA. Using an MLP-based deep learning model for identifying HER2 overexpression, the area under the curve (AUC) reached 0.79 (95% confidence interval [CI] 0.74-0.86) in the training set and 0.73 (95% CI 0.66-0.77) in the validation set. LR and RF had AUC of 0.69 (95% CI 0.63-0.75) and 0.66 (95% CI 0.61-0.70) in the training set and 0.61 (95% CI 0.55-0.67) and 0.59 (95% CI 0.55-0.63) in the test set, respectively. <b>Conclusion:</b> The study firstly presents a non-invasive method for identifying and detecting HER2 expression in BCa CTU images. It might not only reduce the cost and subjectivity of traditional HER2 testing but also provide a new technical method for the precise treatment of BCa.</p>\",\"PeriodicalId\":3,\"journal\":{\"name\":\"ACS Applied Electronic Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.3000,\"publicationDate\":\"2024-10-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11540498/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Electronic Materials\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.7150/jca.101296\",\"RegionNum\":3,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, ELECTRICAL & ELECTRONIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Electronic Materials","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.7150/jca.101296","RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0
摘要
目的:膀胱癌(BCa)是泌尿系统中最常见的恶性肿瘤之一。HER2过表达的膀胱癌可从更精确的治疗中获益,但HER2检测成本高昂且主观性强。本研究旨在利用计算机断层尿路造影(CTU)图像检测 HER2 表达。方法:我们收集了武汉大学人民医院97例排泄期BCa患者的CTU图像,手动划分BCa区域,使用Pyradiomics软件包提取放射学特征,通过主成分分析(PCA)进行数据降维,并训练三种模型(逻辑回归[LR]、随机森林[RF]和多层感知器[MLP])来判别HER2表达状态。结果使用 Pyradiomics 软件包提取了 975 个放射学特征,通过 PCA,方差曲线下的累积解释面积为 90.964。使用基于 MLP 的深度学习模型识别 HER2 过度表达,训练集的曲线下面积(AUC)达到 0.79(95% 置信区间 [CI] 0.74-0.86),验证集达到 0.73(95% CI 0.66-0.77)。LR和RF在训练集中的AUC分别为0.69(95% CI 0.63-0.75)和0.66(95% CI 0.61-0.70),在测试集中分别为0.61(95% CI 0.55-0.67)和0.59(95% CI 0.55-0.63)。结论该研究首次提出了一种在 BCa CTU 图像中识别和检测 HER2 表达的无创方法。它不仅可以降低传统 HER2 检测的成本和主观性,还能为 BCa 的精确治疗提供一种新的技术方法。
Deep learning-based computed tomography urography image analysis for prediction of HER2 status in bladder cancer.
Purpose: Bladder cancer (BCa) is one of the most common malignant tumors in the urinary system. BCa with HER2 overexpression can benefit from more precise treatments, but HER2 testing is costly and subjective. This study aimed to detect HER2 expression using computed tomography urography (CTU) images. Method: We gathered CTU images from 97 patients with BCa during the excretion phase in Renmin Hospital of Wuhan University, manually delineated the BCa regions, extracted radiomic features using the Pyradiomics package, conducted data dimensionality reduction via principal component analysis (PCA), and trained three models (Logistic Regression [LR], Random Forest [RF] and Multilayer Perceptron [MLP]) to discern the HER2 expression status. Results: Pyradiomics package was used to extract 975 radiological features and the cumulative interpretation area under the variance curve was 90.964 by PCA. Using an MLP-based deep learning model for identifying HER2 overexpression, the area under the curve (AUC) reached 0.79 (95% confidence interval [CI] 0.74-0.86) in the training set and 0.73 (95% CI 0.66-0.77) in the validation set. LR and RF had AUC of 0.69 (95% CI 0.63-0.75) and 0.66 (95% CI 0.61-0.70) in the training set and 0.61 (95% CI 0.55-0.67) and 0.59 (95% CI 0.55-0.63) in the test set, respectively. Conclusion: The study firstly presents a non-invasive method for identifying and detecting HER2 expression in BCa CTU images. It might not only reduce the cost and subjectivity of traditional HER2 testing but also provide a new technical method for the precise treatment of BCa.