Aimen Al-Hilfi, Zhen Li, Kenneth M. Merz Jr. and Kevin D. Walker*,
{"title":"揭示紫杉植物中 BAHD 13-O-β-Aminoacyl 转化酶的 Mg2+ 离子依赖性","authors":"Aimen Al-Hilfi, Zhen Li, Kenneth M. Merz Jr. and Kevin D. Walker*, ","doi":"10.1021/jacsau.4c0057710.1021/jacsau.4c00577","DOIUrl":null,"url":null,"abstract":"<p >A <i>Taxus</i> baccatin III:3-amino-3-phenylpropanoyltransferase (BAPT, Accession: AY082804) in clade 6 of the BAHD family catalyzed a Mg<sup>2+</sup>-dependent transfer of isoserines from their corresponding CoA thioesters. An advanced taxane baccatin III on the paclitaxel biosynthetic pathway in <i>Taxus</i> plants was incubated BAPT and phenylisoserine CoA or isobutenylisoserinyl CoA with and without MgCl<sub>2</sub>. BAPT biocatalytically converted baccatin III to its 13-<i>O</i>-phenylisoserinyl and 3-(1',1'-dimethylvinyl)isoserinyl analogs, an activity that abrogated when Mg<sup>2+</sup> ions were omitted. Baccatin III analogs that are precursors to new generation taxanes were also assayed with BAPT, the Mg<sup>2+</sup> cofactor, and 3-(1',1'-dimethylvinyl)isoserinyl CoA to make paclitaxel derivatives at <i>k</i><sub>cat</sub>/<i>K</i><sub>M</sub> ranging between 27 and 234 s<sup>–1</sup> M<sup>–1</sup>. Molecular dynamics simulations of the BAPT active site modeled on the crystal structure of a BAHD family member (PDB: 4G0B) suggest that Mg<sup>2+</sup> causes BAPT to use an unconventional active site space compared to those of other BAHD catalysts, studied over the last 25 years, that use a conserved catalytic histidine residue that is glycine in BAPT. The simulated six-membered Mg<sup>2+</sup>–coordination complex includes an interaction that disrupts an intramolecular hydrogen bond between the C13-hydroxyl and the carbonyl oxygen of the C4-acetate of baccatin III. A simulation snapshot captured an active site conformation showing the liberated C13-hydroxyl of baccatin III poised for acylation by BAPT through a potential substrate-assisted mechanism.</p>","PeriodicalId":94060,"journal":{"name":"JACS Au","volume":"4 11","pages":"4249–4262 4249–4262"},"PeriodicalIF":8.5000,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/jacsau.4c00577","citationCount":"0","resultStr":"{\"title\":\"Mg2+-Ion Dependence Revealed for a BAHD 13-O-β-Aminoacyltransferase from Taxus Plants\",\"authors\":\"Aimen Al-Hilfi, Zhen Li, Kenneth M. Merz Jr. and Kevin D. Walker*, \",\"doi\":\"10.1021/jacsau.4c0057710.1021/jacsau.4c00577\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >A <i>Taxus</i> baccatin III:3-amino-3-phenylpropanoyltransferase (BAPT, Accession: AY082804) in clade 6 of the BAHD family catalyzed a Mg<sup>2+</sup>-dependent transfer of isoserines from their corresponding CoA thioesters. An advanced taxane baccatin III on the paclitaxel biosynthetic pathway in <i>Taxus</i> plants was incubated BAPT and phenylisoserine CoA or isobutenylisoserinyl CoA with and without MgCl<sub>2</sub>. BAPT biocatalytically converted baccatin III to its 13-<i>O</i>-phenylisoserinyl and 3-(1',1'-dimethylvinyl)isoserinyl analogs, an activity that abrogated when Mg<sup>2+</sup> ions were omitted. Baccatin III analogs that are precursors to new generation taxanes were also assayed with BAPT, the Mg<sup>2+</sup> cofactor, and 3-(1',1'-dimethylvinyl)isoserinyl CoA to make paclitaxel derivatives at <i>k</i><sub>cat</sub>/<i>K</i><sub>M</sub> ranging between 27 and 234 s<sup>–1</sup> M<sup>–1</sup>. Molecular dynamics simulations of the BAPT active site modeled on the crystal structure of a BAHD family member (PDB: 4G0B) suggest that Mg<sup>2+</sup> causes BAPT to use an unconventional active site space compared to those of other BAHD catalysts, studied over the last 25 years, that use a conserved catalytic histidine residue that is glycine in BAPT. The simulated six-membered Mg<sup>2+</sup>–coordination complex includes an interaction that disrupts an intramolecular hydrogen bond between the C13-hydroxyl and the carbonyl oxygen of the C4-acetate of baccatin III. A simulation snapshot captured an active site conformation showing the liberated C13-hydroxyl of baccatin III poised for acylation by BAPT through a potential substrate-assisted mechanism.</p>\",\"PeriodicalId\":94060,\"journal\":{\"name\":\"JACS Au\",\"volume\":\"4 11\",\"pages\":\"4249–4262 4249–4262\"},\"PeriodicalIF\":8.5000,\"publicationDate\":\"2024-09-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.acs.org/doi/epdf/10.1021/jacsau.4c00577\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"JACS Au\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/jacsau.4c00577\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"JACS Au","FirstCategoryId":"1085","ListUrlMain":"https://pubs.acs.org/doi/10.1021/jacsau.4c00577","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
摘要
BAHD 家族第 6 支系中的一种 Taxus baccatin III:3-amino-3-phenylpropanoyltransferase (BAPT, Accession: AY082804) 可催化 Mg2+ 依赖性异丝氨酸从其相应的 CoA 硫代酯中转移。将 BAPT 和苯基异丝氨酸 CoA 或异丁烯基异丝氨酸 CoA 与氯化镁(MgCl2)或不与氯化镁(MgCl2)孵育,发现紫杉醇生物合成途径上的一种高级类固醇 Baccatin III。BAPT 通过生物催化将巴卡丁 III 转化为 13-O-苯基异丝氨酸和 3-(1',1'-二甲基乙烯基)异丝氨酸类似物。作为新一代紫杉醇前体的 Baccatin III 类似物也与 BAPT、Mg2+ 辅因子和 3-(1',1'-dimethylvinyl)isoserinyl CoA 一起进行了测定,以制造紫杉醇衍生物,其 kcat/KM 在 27 到 234 s-1 M-1 之间。以 BAHD 家族成员(PDB:4G0B)的晶体结构为模型对 BAPT 活性位点进行的分子动力学模拟表明,与过去 25 年中研究的其他 BAHD 催化剂相比,Mg2+ 使 BAPT 使用非常规的活性位点空间,而其他 BAHD 催化剂则使用保守的组氨酸残基(在 BAPT 中为甘氨酸)进行催化。模拟的六元 Mg2+ 配位复合物包括一种相互作用,它破坏了巴卡丁 III 的 C13-羟基和 C4-乙酸酯的羰基氧之间的分子内氢键。模拟快照捕捉到的活性位点构象显示,释放出的巴卡丁 III C13-羟基准备通过潜在的底物辅助机制被 BAPT酰化。
Mg2+-Ion Dependence Revealed for a BAHD 13-O-β-Aminoacyltransferase from Taxus Plants
A Taxus baccatin III:3-amino-3-phenylpropanoyltransferase (BAPT, Accession: AY082804) in clade 6 of the BAHD family catalyzed a Mg2+-dependent transfer of isoserines from their corresponding CoA thioesters. An advanced taxane baccatin III on the paclitaxel biosynthetic pathway in Taxus plants was incubated BAPT and phenylisoserine CoA or isobutenylisoserinyl CoA with and without MgCl2. BAPT biocatalytically converted baccatin III to its 13-O-phenylisoserinyl and 3-(1',1'-dimethylvinyl)isoserinyl analogs, an activity that abrogated when Mg2+ ions were omitted. Baccatin III analogs that are precursors to new generation taxanes were also assayed with BAPT, the Mg2+ cofactor, and 3-(1',1'-dimethylvinyl)isoserinyl CoA to make paclitaxel derivatives at kcat/KM ranging between 27 and 234 s–1 M–1. Molecular dynamics simulations of the BAPT active site modeled on the crystal structure of a BAHD family member (PDB: 4G0B) suggest that Mg2+ causes BAPT to use an unconventional active site space compared to those of other BAHD catalysts, studied over the last 25 years, that use a conserved catalytic histidine residue that is glycine in BAPT. The simulated six-membered Mg2+–coordination complex includes an interaction that disrupts an intramolecular hydrogen bond between the C13-hydroxyl and the carbonyl oxygen of the C4-acetate of baccatin III. A simulation snapshot captured an active site conformation showing the liberated C13-hydroxyl of baccatin III poised for acylation by BAPT through a potential substrate-assisted mechanism.