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Biocatalysis in Asia and the Pacific. 亚太地区的生物催化。
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-26 DOI: 10.1021/jacsau.4c00693
Sabine L Flitsch, Nicholas J Turner, Zhi Li
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引用次数: 0
Biocatalysis in Asia and the Pacific 亚太地区的生物催化
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-26 DOI: 10.1021/jacsau.4c0069310.1021/jacsau.4c00693
Sabine L. Flitsch*, Nicholas J. Turner* and Zhi Li*, 
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引用次数: 0
Challenges and Perspectives of Environmental Catalysis for NO x Reduction. 环境催化还原氮氧化物的挑战与前景。
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 eCollection Date: 2024-08-26 DOI: 10.1021/jacsau.4c00572
Yanqi Chen, Xiangyu Liu, Penglu Wang, Maryam Mansoor, Jin Zhang, Dengchao Peng, Lupeng Han, Dengsong Zhang

Environmental catalysis has attracted great interest in air and water purification. Selective catalytic reduction with ammonia (NH3-SCR) as a representative technology of environmental catalysis is of significance to the elimination of nitrogen oxides (NO x ) emitting from stationary and mobile sources. However, the evolving energy landscape in the nonelectric sector and the changing nature of fuel in motor vehicles present new challenges for NO x catalytic purification over the traditional NH3-SCR catalysts. These challenges primarily revolve around the application limitations of conventional industrial NH3-SCR catalysts, such as V2O5-WO3(MoO3)/TiO2 and chabazite (CHA) structured zeolites, in meeting both the severe requirements of high activity at ultralow temperatures and robust resistance to the wide array of poisons (SO2, HCl, phosphorus, alkali metals, and heavy metals, etc.) existing in more complex operating conditions of new application scenarios. Additionally, volatile organic compounds (VOCs) coexisting with NO x in exhaust gas has emerged as a critical factor further impeding the highly efficient reduction of NO x . Therefore, confronting the challenges inherent in current NH3-SCR technology and drawing from the established NH3-SCR reaction mechanisms, we discern that the strategic manipulation of the properties of surface acidity and redox over NH3-SCR catalysts constitutes an important pathway for increasing the catalytic efficiency at low temperatures. Concurrently, the establishment of protective sites and confined structures combined with the strategies for triggering antagonistic effects emerge as imperative items for strengthening the antipoisoning potentials of NH3-SCR catalysts. Finally, we contemplate the essential status of selective synergistic catalytic elimination technology for abating NO x and VOCs. By virtue of these discussions, we aim to offer a series of innovative guiding perspectives for the further advancement of environmental catalysis technology for the highly efficient NO x catalytic purification from nonelectric industries and motor vehicles.

环境催化技术在空气和水净化领域备受关注。氨的选择性催化还原(NH3-SCR)作为环境催化的代表性技术,对于消除固定和移动污染源排放的氮氧化物(NO x)具有重要意义。然而,非电力行业能源状况的不断变化以及机动车燃料性质的不断变化,为传统 NH3-SCR 催化剂的氮氧化物催化净化带来了新的挑战。这些挑战主要围绕着传统工业 NH3-SCR 催化剂(如 V2O5-WO3(MoO3)/TiO2 和茶沸石 (CHA) 结构沸石)的应用局限性,它们既无法满足超低温高活性的苛刻要求,也无法抵御新应用场景中更为复杂的操作条件下存在的各种毒物(二氧化硫、盐酸、磷、碱金属和重金属等)。此外,废气中与氮氧化物共存的挥发性有机化合物 (VOC) 已成为进一步阻碍氮氧化物高效还原的关键因素。 因此,面对当前 NH3-SCR 技术固有的挑战,并借鉴已有的 NH3-SCR 反应机理,我们发现对 NH3-SCR 催化剂表面酸性和氧化还原特性的战略性处理是提高低温催化效率的重要途径。同时,保护性位点和封闭结构的建立,以及引发拮抗效应的策略,都是增强 NH3-SCR 催化剂抗毒潜力的必要条件。最后,我们探讨了选择性协同催化消除技术在减少氮氧化物和挥发性有机化合物方面的重要地位。通过这些讨论,我们旨在为进一步推动环境催化技术的发展提供一系列创新性的指导观点,以高效催化净化非电力行业和机动车中的 NO x。
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引用次数: 0
Optimizing the Lattice Nitrogen Coordination to Break the Performance Limitation of Metal Nitrides for Electrocatalytic Nitrogen Reduction. 优化晶格氮配位,打破金属氮化物电催化氮还原的性能限制。
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 eCollection Date: 2024-08-26 DOI: 10.1021/jacsau.4c00377
Haiyang Yuan, Chen Zhu, Yu Hou, Hua Gui Yang, Haifeng Wang

Metal nitrides (MNs) are attracting enormous attention in the electrocatalytic nitrogen reduction reaction (NRR) because of their rich lattice nitrogen (Nlat) and the unique ability of Nlat vacancies to activate N2. However, continuing controversy exists on whether MNs are catalytically active for NRR or produce NH3 via the reductive decomposition of Nlat without N2 activation in the in situ electrochemical conditions, let alone the rational design of high-performance MN catalysts. Herein, we focus on the common rocksalt-type MN(100) catalysts and establish a quantitative theoretical framework based on the first-principles microkinetic simulations to resolve these puzzles. The results show that the Mars-van Krevelen mechanism is kinetically more favorable to drive the NRR on a majority of MNs, in which Nlat plays a pivotal role in achieving the Volmer process and N2 activation. In terms of stability, activity, and selectivity, we find that MN(100) with moderate formation energy of Nlat vacancy (E vac) can achieve maximum activity and maintain electrochemical stability, while low- or high-E vac ones are either unstable or catalytically less active. Unfortunately, owing to the five-coordinate structural feature of Nlat on rocksalt-type MN(100), this maximum activity is limited to a yield of NH3 of only ∼10-15 mol s-1 cm-2. Intriguingly, we identify a volcano-type activity-regulating role of the local structural features of Nlat and show that the four-coordinate Nlat can exhibit optimal activity and overcome the performance limitation, while less coordinated Nlat fails. This work provides, arguably for the first time, an in-depth theoretical insight into the activity and stability paradox of MNs for NRR and underlines the importance of reaction kinetic assessment in comparison with the prevailing simple thermodynamic analysis.

金属氮化物(MNs)因其丰富的晶格氮(Nlat)和 Nlat 空位激活 N2 的独特能力,在电催化氮还原反应(NRR)中备受关注。然而,关于 MN 是否对 NRR 具有催化活性,或者在原位电化学条件下通过 Nlat 的还原分解产生 NH3 而不激活 N2 的问题一直存在争议,更不用说高性能 MN 催化剂的合理设计了。在此,我们以常见的岩盐型 MN(100) 催化剂为研究对象,建立了基于第一性原理微动力学模拟的定量理论框架来解决这些难题。结果表明,Mars-van Krevelen 机制在动力学上更有利于驱动大多数 MN 的无还原反应,其中 Nlat 在实现 Volmer 过程和 N2 活化方面起着关键作用。在稳定性、活性和选择性方面,我们发现 Nlat 空位形成能(E vac)适中的 MN(100) 可以达到最大活性并保持电化学稳定性,而低或高 E vac 的 MN(100) 要么不稳定,要么催化活性较低。不幸的是,由于 Nlat 在岩盐型 MN(100) 上的五配位结构特征,这种最大活性仅限于 NH3 的产率仅∼10-15 mol s-1 cm-2。耐人寻味的是,我们发现了 Nlat 局部结构特征的火山型活性调节作用,并表明四配位的 Nlat 可以表现出最佳活性并克服性能限制,而配位较少的 Nlat 则会失效。可以说,这项研究首次从理论上深入揭示了用于 NRR 的 MNs 的活性和稳定性悖论,并强调了反应动力学评估与当前流行的简单热力学分析相比的重要性。
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引用次数: 0
Polyvalent Glycomimetic-Gold Nanoparticles Revealing Critical Roles of Glycan Display on Multivalent Lectin-Glycan Interaction Biophysics and Antiviral Properties. 多价拟甘聚糖-金纳米粒子揭示甘聚糖显示对多价凝集素-甘聚糖相互作用生物物理学和抗病毒性能的关键作用
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 eCollection Date: 2024-08-26 DOI: 10.1021/jacsau.4c00610
Xinyu Ning, Darshita Budhadev, Sara Pollastri, Inga Nehlmeier, Amy Kempf, Iain Manfield, W Bruce Turnbull, Stefan Pöhlmann, Anna Bernardi, Xin Li, Yuan Guo, Dejian Zhou
<p><p>Multivalent lectin-glycan interactions (MLGIs) are widespread and vital for biology, making them attractive therapeutic targets. Unfortunately, the structural and biophysical mechanisms of several key MLGIs remain poorly understood, limiting our ability to design spatially matched glycoconjugates as potential therapeutics against specific MLGIs. We have recently demonstrated that natural oligomannose-coated nanoparticles are powerful probes for MLGIs. They can provide not only quantitative affinity and binding thermodynamic data but also key structural information (<i>e.g</i>, binding site orientation and mode) useful for designing glycoconjugate therapeutics against specific MLGIs. Despite success, how designing parameters (<i>e.g</i>., glycan type, density, and scaffold size) control their MLGI biophysical and antiviral properties remains to be elucidated. A synthetic pseudodimannose (psDiMan) ligand has been shown to selectively bind to a dendritic cell surface tetrameric lectin, DC-SIGN, over some other multimeric lectins sharing monovalent mannose specificity but having distinct cellular functions. Herein, we display psDiMan polyvalently onto gold nanoparticles (GNPs) of varying sizes (<i>e.g</i>., ∼5 and ∼13 nm, denoted as G5- and G13 psDiMan hereafter) to probe how the scaffold size and glycan display control their MLGI properties with DC-SIGN and the closely related lectin DC-SIGNR. We show that G5/13 psDiMan binds strongly to DC-SIGN, with sub-nM <i>K</i> <sub>d</sub>s, with affinity being enhanced with increasing scaffold size, whereas they show apparently no or only weak binding to DC-SIGNR. Interestingly, there is a minimal, GNP-size-dependent, glycan density threshold for forming strong binding with DC-SIGN. By combining temperature-dependent affinity and Van't Hoff analyses, we have developed a new GNP fluorescence quenching assay for MLGI thermodynamics, revealing that DC-SIGN-G<i>x</i>-psDiMan binding is enthalpy-driven, with a standard binding Δ<i>H</i> <sup>0</sup> of ∼ -95 kJ mol<sup>-1</sup>, which is ∼4-fold that of the monovalent binding and is comparable to that measured by isothermal titration calorimetry. We further reveal that the enhanced DC-SIGN affinity with G<i>x</i>-psDiMan with increasing GNP scaffold size is due to reduced binding entropy penalty and not due to enhanced favorable binding enthalpy. We further show that DC-SIGN binds tetravalently to a single G<i>x</i>-psDiMan, irrespective of the GNP size, whereas DC-SIGNR binding is dependent on GNP size, with no apparent binding with G5, and weak cross-linking with G13. Finally, we show that G<i>x</i>-psDiMans potently inhibit DC-SIGN-dependent augmentation of cellular entry of Ebola pseudoviruses with sub-nM EC<sub>50</sub> values, whereas they exhibit no significant (for G5) or weak (for G13) inhibition against DC-SIGNR-augmented viral entry, consistent to their MLGI properties with DC-SIGNR in solution. These results have established G<i>x</i>-psDiMan as
多价凝集素-聚糖相互作用(MLGIs)广泛存在,对生物学至关重要,因此成为极具吸引力的治疗靶标。遗憾的是,人们对几种关键的多价凝集素-糖相互作用的结构和生物物理机制仍然知之甚少,这限制了我们设计空间匹配的糖共轭物作为针对特定多价凝集素-糖相互作用的潜在疗法的能力。我们最近证明,天然低聚甘露糖涂层纳米粒子是 MLGIs 的强大探针。它们不仅能提供定量的亲和力和结合热力学数据,还能提供关键的结构信息(如结合位点的方向和模式),有助于设计针对特定 MLGIs 的糖结合疗法。尽管取得了成功,但设计参数(如聚糖类型、密度和支架大小)如何控制其 MLGI 生物物理和抗病毒特性仍有待阐明。一种合成的假二甘露糖(psDiMan)配体已被证明能选择性地与树突状细胞表面的四聚体凝集素 DC-SIGN 结合,而不是其他一些具有单价甘露糖特异性但具有不同细胞功能的多聚体凝集素。在这里,我们将 psDiMan 多价显示在不同尺寸(如 5 纳米和 13 纳米,以下分别称为 G5 和 G13 psDiMan)的金纳米粒子(GNPs)上,以探究支架尺寸和聚糖显示如何控制其与 DC-SIGN 和密切相关的凝集素 DC-SIGNR 的 MLGI 特性。我们的研究表明,G5/13 psDiMan 与 DC-SIGN 的结合力很强,K ds 在亚毫微米以下,亲和力随着支架尺寸的增大而增强,而它们与 DC-SIGNR 的结合力显然不强或很弱。有趣的是,与 DC-SIGN 形成强结合的糖密度阈值很小,与 GNP 大小有关。通过结合与温度相关的亲和力和 Van't Hoff 分析,我们开发了一种新的 GNP 荧光淬灭测定方法,用于测定 MLGI 热力学,结果显示 DC-SIGN-Gx-psDiMan 的结合是焓驱动的,标准结合 ΔH 0 为 ∼ -95 kJ mol-1,是单价结合的 ∼ 4 倍,与等温滴定量热法测得的结果相当。我们进一步发现,DC-SIGN与Gx-psDiMan的亲和力随着GNP支架尺寸的增加而增强,这是由于结合熵罚的减少,而不是由于有利结合焓的增强。我们进一步发现,无论 GNP 大小如何,DC-SIGN 都能与单个 Gx-psDiMan 四价结合,而 DC-SIGNR 的结合则取决于 GNP 大小,与 G5 没有明显结合,与 G13 有弱交联。最后,我们发现 Gx-psDiMans 能有效抑制 DC-SIGN 依赖性的埃博拉假病毒进入细胞的增强作用,EC50 值低于 nM,而它们对 DC-SIGNR 增强的病毒进入没有明显(G5)或微弱(G13)的抑制作用,这与它们在溶液中与 DC-SIGNR 的 MLGI 特性一致。这些结果证明 Gx-psDiMan 是一种多功能的新工具,可用于探究 MLGI 的亲和性、选择性和热力学,以及 GNP-聚糖的抗病毒特性。
{"title":"Polyvalent Glycomimetic-Gold Nanoparticles Revealing Critical Roles of Glycan Display on Multivalent Lectin-Glycan Interaction Biophysics and Antiviral Properties.","authors":"Xinyu Ning, Darshita Budhadev, Sara Pollastri, Inga Nehlmeier, Amy Kempf, Iain Manfield, W Bruce Turnbull, Stefan Pöhlmann, Anna Bernardi, Xin Li, Yuan Guo, Dejian Zhou","doi":"10.1021/jacsau.4c00610","DOIUrl":"https://doi.org/10.1021/jacsau.4c00610","url":null,"abstract":"&lt;p&gt;&lt;p&gt;Multivalent lectin-glycan interactions (MLGIs) are widespread and vital for biology, making them attractive therapeutic targets. Unfortunately, the structural and biophysical mechanisms of several key MLGIs remain poorly understood, limiting our ability to design spatially matched glycoconjugates as potential therapeutics against specific MLGIs. We have recently demonstrated that natural oligomannose-coated nanoparticles are powerful probes for MLGIs. They can provide not only quantitative affinity and binding thermodynamic data but also key structural information (&lt;i&gt;e.g&lt;/i&gt;, binding site orientation and mode) useful for designing glycoconjugate therapeutics against specific MLGIs. Despite success, how designing parameters (&lt;i&gt;e.g&lt;/i&gt;., glycan type, density, and scaffold size) control their MLGI biophysical and antiviral properties remains to be elucidated. A synthetic pseudodimannose (psDiMan) ligand has been shown to selectively bind to a dendritic cell surface tetrameric lectin, DC-SIGN, over some other multimeric lectins sharing monovalent mannose specificity but having distinct cellular functions. Herein, we display psDiMan polyvalently onto gold nanoparticles (GNPs) of varying sizes (&lt;i&gt;e.g&lt;/i&gt;., ∼5 and ∼13 nm, denoted as G5- and G13 psDiMan hereafter) to probe how the scaffold size and glycan display control their MLGI properties with DC-SIGN and the closely related lectin DC-SIGNR. We show that G5/13 psDiMan binds strongly to DC-SIGN, with sub-nM &lt;i&gt;K&lt;/i&gt; &lt;sub&gt;d&lt;/sub&gt;s, with affinity being enhanced with increasing scaffold size, whereas they show apparently no or only weak binding to DC-SIGNR. Interestingly, there is a minimal, GNP-size-dependent, glycan density threshold for forming strong binding with DC-SIGN. By combining temperature-dependent affinity and Van't Hoff analyses, we have developed a new GNP fluorescence quenching assay for MLGI thermodynamics, revealing that DC-SIGN-G&lt;i&gt;x&lt;/i&gt;-psDiMan binding is enthalpy-driven, with a standard binding Δ&lt;i&gt;H&lt;/i&gt; &lt;sup&gt;0&lt;/sup&gt; of ∼ -95 kJ mol&lt;sup&gt;-1&lt;/sup&gt;, which is ∼4-fold that of the monovalent binding and is comparable to that measured by isothermal titration calorimetry. We further reveal that the enhanced DC-SIGN affinity with G&lt;i&gt;x&lt;/i&gt;-psDiMan with increasing GNP scaffold size is due to reduced binding entropy penalty and not due to enhanced favorable binding enthalpy. We further show that DC-SIGN binds tetravalently to a single G&lt;i&gt;x&lt;/i&gt;-psDiMan, irrespective of the GNP size, whereas DC-SIGNR binding is dependent on GNP size, with no apparent binding with G5, and weak cross-linking with G13. Finally, we show that G&lt;i&gt;x&lt;/i&gt;-psDiMans potently inhibit DC-SIGN-dependent augmentation of cellular entry of Ebola pseudoviruses with sub-nM EC&lt;sub&gt;50&lt;/sub&gt; values, whereas they exhibit no significant (for G5) or weak (for G13) inhibition against DC-SIGNR-augmented viral entry, consistent to their MLGI properties with DC-SIGNR in solution. These results have established G&lt;i&gt;x&lt;/i&gt;-psDiMan as","PeriodicalId":94060,"journal":{"name":"JACS Au","volume":null,"pages":null},"PeriodicalIF":8.5,"publicationDate":"2024-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11350578/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142116495","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Conformational Modulation of a Mobile Loop Controls Catalysis in the (βα)8-Barrel Enzyme of Histidine Biosynthesis HisF 移动环的构象调节控制组氨酸合成的 (βα)8 管状酶 HisF 的催化作用
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 DOI: 10.1021/jacsau.4c0055810.1021/jacsau.4c00558
Enrico Hupfeld, Sandra Schlee, Jan Philip Wurm, Chitra Rajendran, Dariia Yehorova, Eva Vos, Dinesh Ravindra Raju, Shina Caroline Lynn Kamerlin*, Remco Sprangers* and Reinhard Sterner*, 

The overall significance of loop motions for enzymatic activity is generally accepted. However, it has largely remained unclear whether and how such motions can control different steps of catalysis. We have studied this problem on the example of the mobile active site β1α1-loop (loop1) of the (βα)8-barrel enzyme HisF, which is the cyclase subunit of imidazole glycerol phosphate synthase. Loop1 variants containing single mutations of conserved amino acids showed drastically reduced rates for the turnover of the substrates N′-[(5′-phosphoribulosyl) formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PrFAR) and ammonia to the products imidazole glycerol phosphate (ImGP) and 5-aminoimidazole-4-carboxamide-ribotide (AICAR). A comprehensive mechanistic analysis including stopped-flow kinetics, X-ray crystallography, NMR spectroscopy, and molecular dynamics simulations detected three conformations of loop1 (open, detached, closed) whose populations differed between wild-type HisF and functionally affected loop1 variants. Transient stopped-flow kinetic experiments demonstrated that wt-HisF binds PrFAR by an induced-fit mechanism whereas catalytically impaired loop1 variants bind PrFAR by a simple two-state mechanism. Our findings suggest that PrFAR-induced formation of the closed conformation of loop1 brings active site residues in a productive orientation for chemical turnover, which we show to be the rate-limiting step of HisF catalysis. After the cyclase reaction, the closed loop conformation is destabilized, which favors the formation of detached and open conformations and hence facilitates the release of the products ImGP and AICAR. Our data demonstrate how different conformations of active site loops contribute to different catalytic steps, a finding that is presumably of broad relevance for the reaction mechanisms of (βα)8-barrel enzymes and beyond.

环路运动对酶活性的整体意义已被普遍接受。然而,这种运动是否以及如何控制催化的不同步骤,在很大程度上仍不清楚。我们以(βα)8-桶酶 HisF(咪唑甘油磷酸合成酶的环化酶亚基)的移动活性位点β1α1-环(loop1)为例研究了这一问题。含有单个保守氨基酸突变的 Loop1 变体在底物 N′-[(5′-磷酰)甲酰亚胺基]-5-氨基咪唑-4-甲酰胺核糖核苷酸(PrFAR)和氨转化为产物咪唑甘油磷酸酯(ImGP)和 5-氨基咪唑-4-甲酰胺核糖核苷酸(AICAR)的过程中显示出急剧下降的速率。一项包括停流动力学、X 射线晶体学、核磁共振光谱学和分子动力学模拟在内的综合机理分析检测出了 loop1 的三种构象(开放、分离和封闭),野生型 HisF 和受功能影响的 loop1 变体在这些构象的数量上存在差异。瞬时停流动力学实验表明,wt-HisF 通过诱导-拟合机制与 PrFAR 结合,而催化受损的 loop1 变体则通过简单的双态机制与 PrFAR 结合。我们的研究结果表明,PrFAR 诱导形成的 loop1 闭合构象使活性位点残基处于化学周转的有效取向,我们证明这是 HisF 催化的限速步骤。环化酶反应后,闭合环构象不稳定,这有利于形成分离和开放构象,从而促进产物 ImGP 和 AICAR 的释放。我们的数据证明了活性位点环的不同构象如何有助于不同的催化步骤,这一发现可能对(βα)8-桶酶及其他酶的反应机制具有广泛的意义。
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引用次数: 0
Optimizing the Lattice Nitrogen Coordination to Break the Performance Limitation of Metal Nitrides for Electrocatalytic Nitrogen Reduction 优化晶格氮配位,打破金属氮化物电催化氮还原的性能限制
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 DOI: 10.1021/jacsau.4c0037710.1021/jacsau.4c00377
Haiyang Yuan, Chen Zhu, Yu Hou, Hua Gui Yang and Haifeng Wang*, 

Metal nitrides (MNs) are attracting enormous attention in the electrocatalytic nitrogen reduction reaction (NRR) because of their rich lattice nitrogen (Nlat) and the unique ability of Nlat vacancies to activate N2. However, continuing controversy exists on whether MNs are catalytically active for NRR or produce NH3 via the reductive decomposition of Nlat without N2 activation in the in situ electrochemical conditions, let alone the rational design of high-performance MN catalysts. Herein, we focus on the common rocksalt-type MN(100) catalysts and establish a quantitative theoretical framework based on the first-principles microkinetic simulations to resolve these puzzles. The results show that the Mars-van Krevelen mechanism is kinetically more favorable to drive the NRR on a majority of MNs, in which Nlat plays a pivotal role in achieving the Volmer process and N2 activation. In terms of stability, activity, and selectivity, we find that MN(100) with moderate formation energy of Nlat vacancy (Evac) can achieve maximum activity and maintain electrochemical stability, while low- or high-Evac ones are either unstable or catalytically less active. Unfortunately, owing to the five-coordinate structural feature of Nlat on rocksalt-type MN(100), this maximum activity is limited to a yield of NH3 of only ∼10–15 mol s–1 cm–2. Intriguingly, we identify a volcano-type activity-regulating role of the local structural features of Nlat and show that the four-coordinate Nlat can exhibit optimal activity and overcome the performance limitation, while less coordinated Nlat fails. This work provides, arguably for the first time, an in-depth theoretical insight into the activity and stability paradox of MNs for NRR and underlines the importance of reaction kinetic assessment in comparison with the prevailing simple thermodynamic analysis.

金属氮化物(MNs)因其丰富的晶格氮(Nlat)和 Nlat 空位激活 N2 的独特能力,在电催化氮还原反应(NRR)中备受关注。然而,关于 MN 是否对 NRR 具有催化活性,或者在原位电化学条件下通过 Nlat 的还原分解产生 NH3 而不激活 N2 的问题一直存在争议,更不用说高性能 MN 催化剂的合理设计了。在此,我们以常见的岩盐型 MN(100) 催化剂为研究对象,建立了基于第一性原理微动力学模拟的定量理论框架来解决这些难题。结果表明,Mars-van Krevelen 机制在动力学上更有利于驱动大多数 MN 的无还原反应,其中 Nlat 在实现 Volmer 过程和 N2 活化方面起着关键作用。在稳定性、活性和选择性方面,我们发现 Nlat 空位形成能(Evac)适中的 MN(100) 可以达到最大活性并保持电化学稳定性,而低或高 Evac 的 MN(100) 则不稳定或催化活性较低。遗憾的是,由于 Nlat 在岩盐型 MN(100) 上的五配位结构特征,这种最大活性仅限于 NH3 的产率仅∼10-15 mol s-1 cm-2。耐人寻味的是,我们发现了 Nlat 局部结构特征的火山型活性调节作用,并表明四配位的 Nlat 可以表现出最佳活性并克服性能限制,而配位较少的 Nlat 则会失效。可以说,这项研究首次从理论上深入揭示了用于 NRR 的 MNs 的活性和稳定性悖论,并强调了反应动力学评估与当前流行的简单热力学分析相比的重要性。
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引用次数: 0
Conformational Modulation of a Mobile Loop Controls Catalysis in the (βα)8-Barrel Enzyme of Histidine Biosynthesis HisF. 移动环的构象调控控制组氨酸合成的 (βα)8 管状酶 HisF 的催化作用
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 eCollection Date: 2024-08-26 DOI: 10.1021/jacsau.4c00558
Enrico Hupfeld, Sandra Schlee, Jan Philip Wurm, Chitra Rajendran, Dariia Yehorova, Eva Vos, Dinesh Ravindra Raju, Shina Caroline Lynn Kamerlin, Remco Sprangers, Reinhard Sterner

The overall significance of loop motions for enzymatic activity is generally accepted. However, it has largely remained unclear whether and how such motions can control different steps of catalysis. We have studied this problem on the example of the mobile active site β1α1-loop (loop1) of the (βα)8-barrel enzyme HisF, which is the cyclase subunit of imidazole glycerol phosphate synthase. Loop1 variants containing single mutations of conserved amino acids showed drastically reduced rates for the turnover of the substrates N'-[(5'-phosphoribulosyl) formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PrFAR) and ammonia to the products imidazole glycerol phosphate (ImGP) and 5-aminoimidazole-4-carboxamide-ribotide (AICAR). A comprehensive mechanistic analysis including stopped-flow kinetics, X-ray crystallography, NMR spectroscopy, and molecular dynamics simulations detected three conformations of loop1 (open, detached, closed) whose populations differed between wild-type HisF and functionally affected loop1 variants. Transient stopped-flow kinetic experiments demonstrated that wt-HisF binds PrFAR by an induced-fit mechanism whereas catalytically impaired loop1 variants bind PrFAR by a simple two-state mechanism. Our findings suggest that PrFAR-induced formation of the closed conformation of loop1 brings active site residues in a productive orientation for chemical turnover, which we show to be the rate-limiting step of HisF catalysis. After the cyclase reaction, the closed loop conformation is destabilized, which favors the formation of detached and open conformations and hence facilitates the release of the products ImGP and AICAR. Our data demonstrate how different conformations of active site loops contribute to different catalytic steps, a finding that is presumably of broad relevance for the reaction mechanisms of (βα)8-barrel enzymes and beyond.

环路运动对酶活性的整体意义已被普遍接受。然而,这种运动是否以及如何控制催化的不同步骤,在很大程度上仍不清楚。我们以(βα)8-桶酶 HisF(咪唑甘油磷酸合成酶的环化酶亚基)的移动活性位点β1α1-环(loop1)为例研究了这一问题。含有单个保守氨基酸突变的 Loop1 变体在底物 N'-[(5'-磷酰)甲酰亚胺]-5-氨基咪唑-4-甲酰胺核糖核苷酸(PrFAR)和氨转化为产物咪唑甘油磷酸酯(ImGP)和 5-氨基咪唑-4-甲酰胺核糖核苷酸(AICAR)的过程中显示出急剧下降的速率。一项包括停流动力学、X 射线晶体学、核磁共振光谱学和分子动力学模拟在内的综合机理分析检测出了 loop1 的三种构象(开放、分离和封闭),野生型 HisF 和受功能影响的 loop1 变体在这些构象的数量上存在差异。瞬时停流动力学实验表明,wt-HisF 通过诱导-拟合机制与 PrFAR 结合,而催化受损的 loop1 变体则通过简单的双态机制与 PrFAR 结合。我们的研究结果表明,PrFAR 诱导形成的 loop1 闭合构象使活性位点残基处于化学周转的有效取向,我们证明这是 HisF 催化的限速步骤。环化酶反应后,闭合环构象不稳定,这有利于形成分离和开放构象,从而促进产物 ImGP 和 AICAR 的释放。我们的数据证明了活性位点环的不同构象如何有助于不同的催化步骤,这一发现可能对(βα)8-桶酶及其他酶的反应机制具有广泛的意义。
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引用次数: 0
Harnessing a Pd4 Water-Soluble Molecular Capsule as a Size-Selective Catalyst for Targeted Oxidation of Alkyl Aromatics. 利用 Pd4 水溶性分子胶囊作为烷基芳烃定向氧化的尺寸选择性催化剂。
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 eCollection Date: 2024-08-26 DOI: 10.1021/jacsau.4c00539
Valiyakath Abdul Rinshad, Medha Aggarwal, Jack K Clegg, Partha Sarathi Mukherjee

Molecular hosts with functional cavities can emulate enzymatic behavior through selective encapsulation of substrates, resulting in high chemo-, regio-, and stereoselective product formation. It is still challenging to synthesize enzyme-mimicking hosts that exhibit a narrow substrate scope that relies upon the recognition of substrates based on the molecular size. Herein, we introduce a Pd4 self-assembled water-soluble molecular capsule [M 4 L 2] (MC) that was formed through the self-assembly of a ligand L (4',4‴'-(1,4-phenylene)bis(1',4'-dihydro-[4,2':6',4″-terpyridine]-3',5'-dicarbonitrile)) with the acceptor cis-[(en)Pd(NO3)2] [en = ethane-1,2-diamine] (M). The molecular capsule MC showed size-selective recognition towards xylene isomers. The redox property of MC was explored for efficient and selective oxidation of one of the alkyl groups of m-xylene and p-xylene to their corresponding toluic acids using molecular O2 as an oxidant upon photoirradiation. Employing host-guest chemistry, we demonstrate the homogeneous catalysis of alkyl aromatics to the corresponding monocarboxylic acids in water under mild conditions. Despite homogeneous catalysis, the products were separated from the reaction mixtures by simple filtration/extraction, and the catalyst was reused. The larger analogues of the alkyl aromatics failed to bind within the MC's hydrophobic cavity, resulting in a lower/negligible reaction outcome. The present study represents a facile approach for selective photo-oxidation of xylene isomers to their corresponding toluic acids in an aqueous medium under mild conditions.

具有功能性空腔的分子宿主可以通过选择性地封装底物来模拟酶的行为,从而形成高化学、区域和立体选择性的产物。合成模拟酶的宿主仍具有挑战性,这种宿主的底物范围较窄,需要根据分子大小来识别底物。在此,我们介绍一种 Pd4 自组装水溶性分子胶囊 [M 4 L 2] (MC),它是通过配体 L(4',4‴'-(1,4-亚苯基)双(1',4'-二氢-[4,2':6',4″-三吡啶]-3',5'-二甲腈)与受体顺式-[(en)Pd(NO3)2] [en = 乙烷-1,2-二胺] (M)。分子胶囊 MC 显示出对二甲苯异构体的尺寸选择性识别能力。研究人员利用分子 O2 作为氧化剂,探索了 MC 的氧化还原特性,以便在光照射下将间二甲苯和对二甲苯的一个烷基高效、选择性地氧化为相应的甲苯酸。利用主客体化学,我们展示了在温和条件下,在水中将烷基芳烃均相催化成相应的一元羧酸的过程。尽管是均相催化,但通过简单的过滤/萃取,产物就能从反应混合物中分离出来,催化剂也可重复使用。较大的烷基芳烃类似物未能在 MC 的疏水腔内结合,导致反应结果较低/可忽略不计。本研究代表了一种在温和条件下,在水介质中将二甲苯异构体选择性光氧化成相应甲苯酸的简便方法。
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引用次数: 0
Harnessing a Pd4 Water-Soluble Molecular Capsule as a Size-Selective Catalyst for Targeted Oxidation of Alkyl Aromatics 利用 Pd4 水溶性分子胶囊作为烷基芳烃定向氧化的尺寸选择性催化剂
IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-15 DOI: 10.1021/jacsau.4c0053910.1021/jacsau.4c00539
Valiyakath Abdul Rinshad, Medha Aggarwal, Jack K. Clegg and Partha Sarathi Mukherjee*, 

Molecular hosts with functional cavities can emulate enzymatic behavior through selective encapsulation of substrates, resulting in high chemo-, regio-, and stereoselective product formation. It is still challenging to synthesize enzyme-mimicking hosts that exhibit a narrow substrate scope that relies upon the recognition of substrates based on the molecular size. Herein, we introduce a Pd4 self-assembled water-soluble molecular capsule [M4L2] (MC) that was formed through the self-assembly of a ligand L (4′,4‴′-(1,4-phenylene)bis(1′,4′-dihydro-[4,2′:6′,4″-terpyridine]-3′,5′-dicarbonitrile)) with the acceptor cis-[(en)Pd(NO3)2] [en = ethane-1,2-diamine] (M). The molecular capsule MC showed size-selective recognition towards xylene isomers. The redox property of MC was explored for efficient and selective oxidation of one of the alkyl groups of m-xylene and p-xylene to their corresponding toluic acids using molecular O2 as an oxidant upon photoirradiation. Employing host–guest chemistry, we demonstrate the homogeneous catalysis of alkyl aromatics to the corresponding monocarboxylic acids in water under mild conditions. Despite homogeneous catalysis, the products were separated from the reaction mixtures by simple filtration/extraction, and the catalyst was reused. The larger analogues of the alkyl aromatics failed to bind within the MC’s hydrophobic cavity, resulting in a lower/negligible reaction outcome. The present study represents a facile approach for selective photo-oxidation of xylene isomers to their corresponding toluic acids in an aqueous medium under mild conditions.

具有功能性空腔的分子宿主可以通过选择性地封装底物来模拟酶的行为,从而形成高化学、区域和立体选择性的产物。合成模拟酶的宿主仍具有挑战性,这种宿主的底物范围较窄,需要根据分子大小来识别底物。在此,我们介绍一种 Pd4 自组装水溶性分子胶囊 [M4L2](MC),它是通过配体 L(4′,4‴′-(1,4-亚苯基)双(1′,4′-二氢-[4,2′:6′,4″-terpyridine]-3′,5′-dicarbonitrile)) 与受体 cis-[(en)Pd(NO3)2] [en = 乙烷-1,2-二胺] (M)。分子胶囊 MC 显示出对二甲苯异构体的尺寸选择性识别能力。研究人员利用分子 O2 作为氧化剂,探索了 MC 的氧化还原特性,以便在光照射下将间二甲苯和对二甲苯的一个烷基高效、选择性地氧化为相应的甲苯酸。利用主客体化学,我们展示了在温和条件下,在水中将烷基芳烃均相催化成相应的一元羧酸的过程。尽管是均相催化,但通过简单的过滤/萃取,产物就能从反应混合物中分离出来,催化剂也可重复使用。较大的烷基芳烃类似物未能在 MC 的疏水腔内结合,导致反应结果较低/可忽略不计。本研究代表了一种在温和条件下,在水介质中将二甲苯异构体选择性光氧化成相应甲苯酸的简便方法。
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引用次数: 0
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