生成过渡路径的扩散方法

IF 3.8 2区 物理与天体物理 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Journal of Computational Physics Pub Date : 2024-11-19 DOI:10.1016/j.jcp.2024.113590
Luke Triplett, Jianfeng Lu
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引用次数: 0

摘要

在这项工作中,我们试图利用基于分数的生成模型模拟陨变状态之间的罕见转变。由于数据通常难以获得,因此一种生成高质量转换路径的高效方法对分子系统研究非常有价值。我们在本文中开发了两种新颖的路径生成方法:基于链的方法和基于中点的方法。第一种方法偏置原始动力学以促进过渡,而第二种方法则借鉴分裂技术,将原始过渡分解为更小的过渡。为 Müller 势和丙氨酸二肽生成过渡路径的数值结果表明,这些方法在数据丰富和数据稀缺的情况下都很有效。
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Diffusion methods for generating transition paths
In this work, we seek to simulate rare transitions between metastable states using score-based generative models. An efficient method for generating high-quality transition paths is valuable for the study of molecular systems since data is often difficult to obtain. We develop two novel methods for path generation in this paper: a chain-based approach and a midpoint-based approach. The first biases the original dynamics to facilitate transitions, while the second mirrors splitting techniques and breaks down the original transition into smaller transitions. Numerical results of generated transition paths for the Müller potential and for Alanine dipeptide demonstrate the effectiveness of these approaches in both the data-rich and data-scarce regimes.
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来源期刊
Journal of Computational Physics
Journal of Computational Physics 物理-计算机:跨学科应用
CiteScore
7.60
自引率
14.60%
发文量
763
审稿时长
5.8 months
期刊介绍: Journal of Computational Physics thoroughly treats the computational aspects of physical problems, presenting techniques for the numerical solution of mathematical equations arising in all areas of physics. The journal seeks to emphasize methods that cross disciplinary boundaries. The Journal of Computational Physics also publishes short notes of 4 pages or less (including figures, tables, and references but excluding title pages). Letters to the Editor commenting on articles already published in this Journal will also be considered. Neither notes nor letters should have an abstract.
期刊最新文献
Editorial Board Editorial Board Resolution invariant deep operator network for PDEs with complex geometries Stability evaluation of approximate Riemann solvers using the direct Lyapunov method Diffusion methods for generating transition paths
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