一种基于 MiMIC 的简单方法,用于标记内源基因以可视化果蝇的实时转录。

IF 3.7 2区 生物学 Q1 DEVELOPMENTAL BIOLOGY Development Pub Date : 2024-11-25 DOI:10.1242/dev.204294
Lauren Forbes Beadle, Catherine Sutcliffe, Hilary L Ashe
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引用次数: 0

摘要

利用 MS2 或 PP7 系统对果蝇胚胎中的转录进行实时成像,正在改变我们对转录调控的认识。然而,将MS2/PP7干环插入内源基因需要费力的CRISPR基因组编辑。在这里,我们利用之前在果蝇中描述的米诺斯介导的整合盒(MiMIC)转座子系统,建立了一种方法,可以简单快速地将 MS2/PP7 盒插入到携带 MiMIC 插入物的数千个基因中的任何一个基因中。除了产生各种茎环供体蝇种群外,我们还制作了表达与不同荧光蛋白融合的互补衣壳蛋白的新种群。我们通过对胚胎中的内源基因和长非编码 RNA roX1 进行 MS2/PP7 标记和实时成像转录,展示了这种基于 MiMIC 方法的实用性。我们还展示了来自幼虫大脑、翼盘和卵巢的实时转录数据,从而扩大了可使用 MS2/PP7 系统研究的组织范围。总之,这种首次在果蝇中标记 mRNA 的高通量方法将有助于研究果蝇各种组织中数千个内源基因的转录动态。
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A simple MiMIC based approach for tagging endogenous genes to visualise live transcription in Drosophila.

Live imaging of transcription in the Drosophila embryo using the MS2 or PP7 systems is transforming our understanding of transcriptional regulation. However, insertion of MS2/PP7 stem loops into endogenous genes requires laborious CRISPR genome editing. Here we exploit the previously described Minos-mediated integration cassette (MiMIC) transposon system in Drosophila to establish a method for simply and rapidly inserting MS2/PP7 cassettes into any of the thousands of genes carrying a MiMIC insertion. In addition to generating a variety of stem loop donor fly stocks, we have made new stocks expressing the complementary coat proteins fused to different fluorescent proteins. We show the utility of this MiMIC-based approach by MS2/PP7 tagging and live imaging transcription of endogenous genes and the long non-coding RNA, roX1, in the embryo. We also present live transcription data from larval brains, the wing disc and ovary, thereby extending the tissues that can be studied using the MS2/PP7 system. Overall, this first high throughput method for tagging mRNAs in Drosophila will facilitate the study of transcription dynamics of thousands of endogenous genes in a range of Drosophila tissues.

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来源期刊
Development
Development 生物-发育生物学
CiteScore
6.70
自引率
4.30%
发文量
433
审稿时长
3 months
期刊介绍: Development’s scope covers all aspects of plant and animal development, including stem cell biology and regeneration. The single most important criterion for acceptance in Development is scientific excellence. Research papers (articles and reports) should therefore pose and test a significant hypothesis or address a significant question, and should provide novel perspectives that advance our understanding of development. We also encourage submission of papers that use computational methods or mathematical models to obtain significant new insights into developmental biology topics. Manuscripts that are descriptive in nature will be considered only when they lay important groundwork for a field and/or provide novel resources for understanding developmental processes of broad interest to the community. Development includes a Techniques and Resources section for the publication of new methods, datasets, and other types of resources. Papers describing new techniques should include a proof-of-principle demonstration that the technique is valuable to the developmental biology community; they need not include in-depth follow-up analysis. The technique must be described in sufficient detail to be easily replicated by other investigators. Development will also consider protocol-type papers of exceptional interest to the community. We welcome submission of Resource papers, for example those reporting new databases, systems-level datasets, or genetic resources of major value to the developmental biology community. For all papers, the data or resource described must be made available to the community with minimal restrictions upon publication. To aid navigability, Development has dedicated sections of the journal to stem cells & regeneration and to human development. The criteria for acceptance into these sections is identical to those outlined above. Authors and editors are encouraged to nominate appropriate manuscripts for inclusion in one of these sections.
期刊最新文献
A simple MiMIC based approach for tagging endogenous genes to visualise live transcription in Drosophila. ARPP19 phosphorylation site evolution and the switch in cAMP control of oocyte maturation in vertebrates. Barcoding Notch signaling in the developing brain. Cellular retinoic acid binding proteins regulate germ cell proliferation and sex determination in zebrafish. Phospho-regulation of ASCL1-mediated chromatin opening during cellular reprogramming.
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