histolai:一个开源的网络平台,用于协作数字组织学图像注释,具有人工智能驱动的预测集成。

IF 4.9 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer methods and programs in biomedicine Pub Date : 2025-01-01 DOI:10.1016/j.cmpb.2024.108577
Cristian Camilo Pulgarín-Ospina , Rocío del Amor , Julio José Silva-Rodríguez , Adrián Colomer , Valery Naranjo
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引用次数: 0

摘要

数字病理现在是病理工作流程的标准组成部分,提供了许多好处,如高细节的整个幻灯片图像和医院之间即时病例共享的能力。基于深度学习的图像分析方法的最新进展使它们成为数字病理学的潜在援助。然而,开发计算机辅助病理诊断系统的一个重大挑战是缺乏直观的、开源的网络应用程序来进行数据注释。本文提出了一个web服务,该服务有效地提供了可视化和注释数字化组织学图像的工具,集成了人工智能驱动的预测见解。虽然该工具能够处理各种图像格式,但其主要用例是TIFF格式的全幻灯片成像(WSI),专门为组织病理学应用程序量身定制。这种创新的整合不仅彻底改变了可访问性,而且使不熟悉此类工具的病理学家能够使用复杂的深度学习模型。此外,为了证明这种方法的有效性,我们提出了一个涉及多个注释器的以梭形细胞皮肤肿瘤诊断为中心的用例。此外,我们还进行了可用性研究,以显示所开发工具的可行性。
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HistoColAi: An open-source web platform for collaborative digital histology image annotation with AI-driven predictive integration
Digital pathology is now a standard component of the pathology workflow, offering numerous benefits such as high-detail whole slide images and the capability for immediate case sharing between hospitals. Recent advances in deep learning-based methods for image analysis make them a potential aid in digital pathology. However, A significant challenge in developing computer-aided diagnostic systems for pathology is the lack of intuitive, open-source web applications for data annotation. This paper proposes a web service that efficiently provides a tool to visualize and annotate digitized histological images, integrating AI-driven predictive insights. While the tool is capable of handling various image formats, its primary use case is for Whole Slide Imaging (WSI) in the TIFF format, specifically tailored for histopathology applications. This innovative integration not only revolutionizes accessibility but also democratizes the utilization of complex deep-learning models for pathologists unfamiliar with such tools. Moreover, to demonstrate the effectiveness of this approach, we present a use case centered on the diagnosis of spindle cell skin neoplasm involving multiple annotators. Additionally, we conduct a usability study, showing the feasibility of the developed tool.
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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