Cristian Camilo Pulgarín-Ospina , Rocío del Amor , Julio José Silva-Rodríguez , Adrián Colomer , Valery Naranjo
{"title":"histolai:一个开源的网络平台,用于协作数字组织学图像注释,具有人工智能驱动的预测集成。","authors":"Cristian Camilo Pulgarín-Ospina , Rocío del Amor , Julio José Silva-Rodríguez , Adrián Colomer , Valery Naranjo","doi":"10.1016/j.cmpb.2024.108577","DOIUrl":null,"url":null,"abstract":"<div><div>Digital pathology is now a standard component of the pathology workflow, offering numerous benefits such as high-detail whole slide images and the capability for immediate case sharing between hospitals. Recent advances in deep learning-based methods for image analysis make them a potential aid in digital pathology. However, A significant challenge in developing computer-aided diagnostic systems for pathology is the lack of intuitive, open-source web applications for data annotation. This paper proposes a web service that efficiently provides a tool to visualize and annotate digitized histological images, integrating AI-driven predictive insights. While the tool is capable of handling various image formats, its primary use case is for Whole Slide Imaging (WSI) in the TIFF format, specifically tailored for histopathology applications. This innovative integration not only revolutionizes accessibility but also democratizes the utilization of complex deep-learning models for pathologists unfamiliar with such tools. Moreover, to demonstrate the effectiveness of this approach, we present a use case centered on the diagnosis of spindle cell skin neoplasm involving multiple annotators. Additionally, we conduct a usability study, showing the feasibility of the developed tool.</div></div>","PeriodicalId":10624,"journal":{"name":"Computer methods and programs in biomedicine","volume":"260 ","pages":"Article 108577"},"PeriodicalIF":4.9000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"HistoColAi: An open-source web platform for collaborative digital histology image annotation with AI-driven predictive integration\",\"authors\":\"Cristian Camilo Pulgarín-Ospina , Rocío del Amor , Julio José Silva-Rodríguez , Adrián Colomer , Valery Naranjo\",\"doi\":\"10.1016/j.cmpb.2024.108577\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Digital pathology is now a standard component of the pathology workflow, offering numerous benefits such as high-detail whole slide images and the capability for immediate case sharing between hospitals. Recent advances in deep learning-based methods for image analysis make them a potential aid in digital pathology. However, A significant challenge in developing computer-aided diagnostic systems for pathology is the lack of intuitive, open-source web applications for data annotation. This paper proposes a web service that efficiently provides a tool to visualize and annotate digitized histological images, integrating AI-driven predictive insights. While the tool is capable of handling various image formats, its primary use case is for Whole Slide Imaging (WSI) in the TIFF format, specifically tailored for histopathology applications. This innovative integration not only revolutionizes accessibility but also democratizes the utilization of complex deep-learning models for pathologists unfamiliar with such tools. Moreover, to demonstrate the effectiveness of this approach, we present a use case centered on the diagnosis of spindle cell skin neoplasm involving multiple annotators. Additionally, we conduct a usability study, showing the feasibility of the developed tool.</div></div>\",\"PeriodicalId\":10624,\"journal\":{\"name\":\"Computer methods and programs in biomedicine\",\"volume\":\"260 \",\"pages\":\"Article 108577\"},\"PeriodicalIF\":4.9000,\"publicationDate\":\"2025-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer methods and programs in biomedicine\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0169260724005704\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer methods and programs in biomedicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0169260724005704","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
HistoColAi: An open-source web platform for collaborative digital histology image annotation with AI-driven predictive integration
Digital pathology is now a standard component of the pathology workflow, offering numerous benefits such as high-detail whole slide images and the capability for immediate case sharing between hospitals. Recent advances in deep learning-based methods for image analysis make them a potential aid in digital pathology. However, A significant challenge in developing computer-aided diagnostic systems for pathology is the lack of intuitive, open-source web applications for data annotation. This paper proposes a web service that efficiently provides a tool to visualize and annotate digitized histological images, integrating AI-driven predictive insights. While the tool is capable of handling various image formats, its primary use case is for Whole Slide Imaging (WSI) in the TIFF format, specifically tailored for histopathology applications. This innovative integration not only revolutionizes accessibility but also democratizes the utilization of complex deep-learning models for pathologists unfamiliar with such tools. Moreover, to demonstrate the effectiveness of this approach, we present a use case centered on the diagnosis of spindle cell skin neoplasm involving multiple annotators. Additionally, we conduct a usability study, showing the feasibility of the developed tool.
期刊介绍:
To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine.
Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.