IF 3.7 3区 医学 Q2 CHEMISTRY, MEDICINAL Chemical Research in Toxicology Pub Date : 2025-02-20 DOI:10.1021/acs.chemrestox.4c0046910.1021/acs.chemrestox.4c00469
Xiang Deng, Hui Zhang, Yang Wang, Dongbo Ma and Qiuge Wu*, 
{"title":"Exploring Potential Associations between Benzo[a]pyrene, Nicotine Exposure, and Lung Cancer: Molecular Insights, Prognostic Biomarkers, and Immune Cell Infiltration","authors":"Xiang Deng,&nbsp;Hui Zhang,&nbsp;Yang Wang,&nbsp;Dongbo Ma and Qiuge Wu*,&nbsp;","doi":"10.1021/acs.chemrestox.4c0046910.1021/acs.chemrestox.4c00469","DOIUrl":null,"url":null,"abstract":"<p >Benzo[<i>a</i>]pyrene (BaP) and nicotine exposure have been implicated in lung cancer development. This study aims to elucidate the molecular mechanisms and potential biomarkers associated with this exposure in lung cancer patients. We integrated gene expression data from The Cancer Genome Atlas lung cancer cohort and the Comparative Toxicogenomics Database to identify differentially expressed genes (DEGs) associated with BaP and nicotine exposure. Enrichment analyses, survival analyses, and immune cell infiltration analyses were conducted to interpret the biological significance of these DEGs. A risk score model and a nomogram were constructed for a prognostic evaluation. We identified 163 DEGs related to BaP and nicotine exposure in lung cancer. Enrichment analysis revealed significant biological processes and pathways, including “IL-17 signaling”, “cellular senescence”, and “p53 signaling”. From the DEGs, 34 prognostic genes were identified, with <i>CLDN5</i>, <i>DNASE1L3</i>, and <i>GPR37</i> being independent prognostic factors. A risk score model based on these genes showed significant prognostic value, with high-risk patients exhibiting poorer survival outcomes. Additionally, a nomogram based on these risk scores demonstrated good predictive accuracy and clinical utility. Kaplan–Meier analyses confirmed that high expression of <i>CLDN5</i> and <i>GPR37</i> correlated with poor survival, while high <i>DNASE1L3</i> expression indicated better survival. Single-gene enrichment analyses linked these genes to immune responses, cell adhesion, and DNA methylation. Immune cell infiltration analysis revealed significant correlations between the expression of these genes and the infiltration of various immune cell types. Our findings highlight the significant role of <i>CLDN5</i>, <i>DNASE1L3</i>, and <i>GPR37</i> in lung cancer associated with BaP and nicotine exposure. The constructed risk score model and nomogram provide valuable tools for prognostication, and the identified genes offer potential targets for therapeutic intervention. Understanding the influence of toxic exposure on the tumor-immune microenvironment can guide future research and treatment strategies.</p>","PeriodicalId":31,"journal":{"name":"Chemical Research in Toxicology","volume":"38 3","pages":"458–470 458–470"},"PeriodicalIF":3.7000,"publicationDate":"2025-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemical Research in Toxicology","FirstCategoryId":"3","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.chemrestox.4c00469","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MEDICINAL","Score":null,"Total":0}
引用次数: 0

摘要

苯并[a]芘(BaP)和尼古丁的暴露与肺癌的发生有关。本研究旨在阐明与肺癌患者接触苯并[a]芘有关的分子机制和潜在生物标志物。我们整合了癌症基因组图谱肺癌队列和比较毒物基因组学数据库的基因表达数据,以确定与BaP和尼古丁暴露相关的差异表达基因(DEGs)。为了解释这些 DEGs 的生物学意义,研究人员进行了富集分析、生存分析和免疫细胞浸润分析。为进行预后评估,我们建立了一个风险评分模型和一个提名图。我们发现了163个与肺癌中BaP和尼古丁暴露相关的DEGs。富集分析揭示了重要的生物过程和通路,包括 "IL-17 信号传导"、"细胞衰老 "和 "p53 信号传导"。从DEGs中发现了34个预后基因,其中CLDN5、DNASE1L3和GPR37是独立的预后因素。基于这些基因的风险评分模型显示出显著的预后价值,高风险患者的生存率较低。此外,基于这些风险评分的提名图也显示出良好的预测准确性和临床实用性。Kaplan-Meier 分析证实,CLDN5 和 GPR37 的高表达与生存率低有关,而 DNASE1L3 的高表达则表明生存率较高。单基因富集分析将这些基因与免疫反应、细胞粘附和DNA甲基化联系起来。免疫细胞浸润分析显示,这些基因的表达与各种免疫细胞类型的浸润之间存在显著相关性。我们的研究结果凸显了 CLDN5、DNASE1L3 和 GPR37 在与 BaP 和尼古丁暴露相关的肺癌中的重要作用。构建的风险评分模型和提名图为预后提供了有价值的工具,而鉴定出的基因则为治疗干预提供了潜在的靶点。了解毒性暴露对肿瘤免疫微环境的影响可以指导未来的研究和治疗策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Exploring Potential Associations between Benzo[a]pyrene, Nicotine Exposure, and Lung Cancer: Molecular Insights, Prognostic Biomarkers, and Immune Cell Infiltration

Benzo[a]pyrene (BaP) and nicotine exposure have been implicated in lung cancer development. This study aims to elucidate the molecular mechanisms and potential biomarkers associated with this exposure in lung cancer patients. We integrated gene expression data from The Cancer Genome Atlas lung cancer cohort and the Comparative Toxicogenomics Database to identify differentially expressed genes (DEGs) associated with BaP and nicotine exposure. Enrichment analyses, survival analyses, and immune cell infiltration analyses were conducted to interpret the biological significance of these DEGs. A risk score model and a nomogram were constructed for a prognostic evaluation. We identified 163 DEGs related to BaP and nicotine exposure in lung cancer. Enrichment analysis revealed significant biological processes and pathways, including “IL-17 signaling”, “cellular senescence”, and “p53 signaling”. From the DEGs, 34 prognostic genes were identified, with CLDN5, DNASE1L3, and GPR37 being independent prognostic factors. A risk score model based on these genes showed significant prognostic value, with high-risk patients exhibiting poorer survival outcomes. Additionally, a nomogram based on these risk scores demonstrated good predictive accuracy and clinical utility. Kaplan–Meier analyses confirmed that high expression of CLDN5 and GPR37 correlated with poor survival, while high DNASE1L3 expression indicated better survival. Single-gene enrichment analyses linked these genes to immune responses, cell adhesion, and DNA methylation. Immune cell infiltration analysis revealed significant correlations between the expression of these genes and the infiltration of various immune cell types. Our findings highlight the significant role of CLDN5, DNASE1L3, and GPR37 in lung cancer associated with BaP and nicotine exposure. The constructed risk score model and nomogram provide valuable tools for prognostication, and the identified genes offer potential targets for therapeutic intervention. Understanding the influence of toxic exposure on the tumor-immune microenvironment can guide future research and treatment strategies.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
7.90
自引率
7.30%
发文量
215
审稿时长
3.5 months
期刊介绍: Chemical Research in Toxicology publishes Articles, Rapid Reports, Chemical Profiles, Reviews, Perspectives, Letters to the Editor, and ToxWatch on a wide range of topics in Toxicology that inform a chemical and molecular understanding and capacity to predict biological outcomes on the basis of structures and processes. The overarching goal of activities reported in the Journal are to provide knowledge and innovative approaches needed to promote intelligent solutions for human safety and ecosystem preservation. The journal emphasizes insight concerning mechanisms of toxicity over phenomenological observations. It upholds rigorous chemical, physical and mathematical standards for characterization and application of modern techniques.
期刊最新文献
Quantification of Flavors, Volatile Organic Compounds, Tobacco Markers, and Tobacco-Specific Nitrosamines in Heated Tobacco Products and Their Mainstream Aerosol. Nanoparticle-Mediated Embryotoxicity: Mechanisms of Chemical Toxicity and Implications for Biological Development. Systematic Investigation of CYP3A4 Using Side-by-Side Comparisons of Apo, Active Site, and Allosteric-Bound States. Issue Publication Information Issue Editorial Masthead
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1