通过可视化从宏基因组学获得生物信息学见解。

Susan L Havre, Bobbie-Jo Webb-Robertson, Anuj Shah, Christian Posse, Banu Gopalan, Fred J Brockman
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引用次数: 15

摘要

尖端的生物学和生物信息学研究通过对同一样本的多种类型的高通量和其他实验数据的分析,寻求一个系统的视角。系统级分析通常需要通过高级统计和数学对这些数据进行整合和融合。可视化是一种辅助的计算方法,支持对复杂数据或其衍生物进行集成和分析。我们提出了一个生物信息学可视化原型,并特,它描述了从这些不同的数据衍生或分配的分类信息,以比较不同分类的模式。可视化使用户可以轻松地识别数据中的相关模式和异常模式。这些模式可能不会被算法自动检测到,但可能会揭示有价值的信息,从而导致洞察力和发现。我们描述了可视化和交互能力,并展示了它在一个新领域的应用,宏基因组学,它结合了分子生物学和遗传学来鉴定和表征多物种微生物样本的遗传物质。
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Bioinformatic insights from metagenomics through visualization.

Cutting-edge biological and bioinformatics research seeks a systems perspective through the analysis of multiple types of high-throughput and other experimental data for the same sample. Systems-level analysis requires the integration and fusion of such data, typically through advanced statistics and mathematics. Visualization is a complementary computational approach that supports integration and analysis of complex data or its derivatives. We present a bioinformatics visualization prototype, Juxter, which depicts categorical information derived from or assigned to these diverse data for the purpose of comparing patterns across categorizations. The visualization allows users to easily discern correlated and anomalous patterns in the data. These patterns, which might not be detected automatically by algorithms, may reveal valuable information leading to insight and discovery. We describe the visualization and interaction capabilities and demonstrate its utility in a new field, metagenomics, which combines molecular biology and genetics to identify and characterize genetic material from multi-species microbial samples.

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