用于系统生物学方法的原代小鼠肝细胞:用于模拟信号转导通路的标准化体外系统。

U Klingmüller, A Bauer, S Bohl, P J Nickel, K Breitkopf, S Dooley, S Zellmer, C Kern, I Merfort, T Sparna, J Donauer, G Walz, M Geyer, C Kreutz, M Hermes, F Götschel, A Hecht, D Walter, L Egger, K Neubert, C Borner, M Brulport, W Schormann, C Sauer, F Baumann, R Preiss, S MacNelly, P Godoy, E Wiercinska, L Ciuclan, J Edelmann, K Zeilinger, M Heinrich, U M Zanger, R Gebhardt, T Maiwald, R Heinrich, J Timmer, F von Weizsäcker, J G Hengstler
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引用次数: 139

摘要

复杂的细胞网络调节着肝细胞的再生、解毒和分化。通过将实验数据与数学建模相结合,系统生物学在阐明所涉及的关键调控机制和预测有效干预的目标方面具有很大的前景。为了生成适合数学建模的高质量定量数据,标准化的体外系统是必不可少的。因此,作者制定了制备和培养原代小鼠肝细胞的标准操作规程。为了可靠地监测信号通路的动态诱导,作者建立了饥饿条件,并通过量化培养的原代肝细胞的几种代谢功能,即谷胱甘肽- s转移酶、谷氨酰胺合成酶、CYP3A的活性以及向培养基中分泌乳酸和尿素来评估饥饿相关应激的程度。与新鲜分离的肝细胞相比,培养的肝细胞在最初的减少后建立了恒定的代谢活动,这表明培养的肝细胞达到了一种新的平衡状态,不受饥饿条件的影响。为了验证体外系统中信号通路的高度可重复性动态激活,作者检测了JAK-STAT, SMAD, PI3激酶,MAP激酶,NF-kappaB和Wnt/ β -catenin信号通路。为了诱导gp130,使用了JAK1和STAT3磷酸化的IL6,而TGFbeta则激活了SMAD1、SMAD2和SMAD3的磷酸化。添加肝细胞生长因子可刺激Akt/PKB和ERK1/2磷酸化。在gsk3 β受到抑制的情况下,监测了一组具有信号能力的β -连环蛋白的时间依赖性诱导。为了分析磷酸化是否真的导致转录反应,应用了由tgf - β反应动机的多个拷贝驱动的荧光素酶报告基因构建,证明了荧光素酶活性的剂量依赖性增加。此外,在体外系统中研究了tnf样细胞因子Fas配体对细胞凋亡的诱导作用。因此,小鼠肝细胞体外系统为在标准化细胞培养条件下生成高质量定量数据提供了重要基础,这对于通过系统生物学方法阐明关键的肝细胞功能至关重要。
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Primary mouse hepatocytes for systems biology approaches: a standardized in vitro system for modelling of signal transduction pathways.

Complex cellular networks regulate regeneration, detoxification and differentiation of hepatocytes. By combining experimental data with mathematical modelling, systems biology holds great promises to elucidate the key regulatory mechanisms involved and predict targets for efficient intervention. For the generation of high-quality quantitative data suitable for mathematical modelling a standardised in vitro system is essential. Therefore the authors developed standard operating procedures for the preparation and cultivation of primary mouse hepatocytes. To reliably monitor the dynamic induction of signalling pathways, the authors established starvation conditions and evaluated the extent of starvation-associated stress by quantifying several metabolic functions of cultured primary hepatocytes, namely activities of glutathione-S-transferase, glutamine synthetase, CYP3A as well as secretion of lactate and urea into the culture medium. Establishment of constant metabolic activities after an initial decrease compared with freshly isolated hepatocytes showed that the cultured hepatocytes achieve a new equilibrium state that was not affected by our starving conditions. To verify the highly reproducible dynamic activation of signalling pathways in the in vitro system, the authors examined the JAK-STAT, SMAD, PI3 kinase, MAP kinase, NF-kappaB and Wnt/beta-catenin signalling pathways. For the induction of gp130, JAK1 and STAT3 phosphorylation IL6 was used, whereas TGFbeta was applied to activate the phosphorylation of SMAD1, SMAD2 and SMAD3. Both Akt/PKB and ERK1/2 phosphorylation were stimulated by the addition of hepatocyte growth factor. The time-dependent induction of a pool of signalling competent beta-catenin was monitored in response to the inhibition of GSK3beta. To analyse whether phosphorylation is actually leading to transcriptional responses, luciferase reporter gene constructs driven by multiple copies of TGFbeta-responsive motives were applied, demonstrating a dose-dependent increase in luciferase activity. Moreover, the induction of apoptosis by the TNF-like cytokine Fas ligand was studied in the in vitro system. Thus, the mouse hepatocyte in vitro system provides an important basis for the generation of high-quality quantitative data under standardised cell culture conditions that is essential to elucidate critical hepatocellular functions by the systems biology approach.

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Systems theory of Smad signalling. Direct Lyapunov exponent analysis enables parametric study of transient signalling governing cell behaviour. Primary mouse hepatocytes for systems biology approaches: a standardized in vitro system for modelling of signal transduction pathways. Elimination of the initial value parameters when identifying a system close to a Hopf bifurcation. Decreased internalisation of erbB1 mutants in lung cancer is linked with a mechanism conferring sensitivity to gefitinib.
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