本质无序蛋白质流体动力学半径的多样性。

IF 2.2 4区 生物学 Q3 BIOPHYSICS European Biophysics Journal Pub Date : 2023-10-13 DOI:10.1007/s00249-023-01683-8
Michał K. Białobrzewski, Barbara P. Klepka, Agnieszka Michaś, Maja K. Cieplak-Rotowska, Zuzanna Staszałek, Anna Niedźwiecka
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引用次数: 0

摘要

本质无序蛋白(IDP)是高等生物中调节生物过程的一类重要生物分子。缺乏固定的空间结构有助于它们发挥调节功能,并允许生物化学反应的效率由温度和细胞环境控制。从生物物理的角度来看,IDP是具有宽构型状态空间的生物聚合物,其实际构象取决于其氨基酸侧链基团在给定温度和化学条件下的非共价相互作用。因此,给定聚合物长度(N)的IDP的流体动力学半径(Rh)是序列和环境相关变量。我们回顾了通过SEC、AUC、PFG NMR、DLS和FCS实验确定的IDP流体动力学半径的文献值,并用我们对一系列参与人类基因表达调控的蛋白质片段获得的FCS结果对其进行了补充。本文收集的数据表明,在Rh(N)图中,IDP的流体动力学半径值可以跨越折叠的球状蛋白和变性蛋白之间的整个空间。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Diversity of hydrodynamic radii of intrinsically disordered proteins

Intrinsically disordered proteins (IDPs) form an important class of biomolecules regulating biological processes in higher organisms. The lack of a fixed spatial structure facilitates them to perform their regulatory functions and allows the efficiency of biochemical reactions to be controlled by temperature and the cellular environment. From the biophysical point of view, IDPs are biopolymers with a broad configuration state space and their actual conformation depends on non-covalent interactions of its amino acid side chain groups at given temperature and chemical conditions. Thus, the hydrodynamic radius (Rh) of an IDP of a given polymer length (N) is a sequence- and environment-dependent variable. We have reviewed the literature values of hydrodynamic radii of IDPs determined experimentally by SEC, AUC, PFG NMR, DLS, and FCS, and complement them with our FCS results obtained for a series of protein fragments involved in the regulation of human gene expression. The data collected herein show that the values of hydrodynamic radii of IDPs can span the full space between the folded globular and denatured proteins in the Rh(N) diagram.

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来源期刊
European Biophysics Journal
European Biophysics Journal 生物-生物物理
CiteScore
4.30
自引率
0.00%
发文量
43
审稿时长
6-12 weeks
期刊介绍: The journal publishes papers in the field of biophysics, which is defined as the study of biological phenomena by using physical methods and concepts. Original papers, reviews and Biophysics letters are published. The primary goal of this journal is to advance the understanding of biological structure and function by application of the principles of physical science, and by presenting the work in a biophysical context. Papers employing a distinctively biophysical approach at all levels of biological organisation will be considered, as will both experimental and theoretical studies. The criteria for acceptance are scientific content, originality and relevance to biological systems of current interest and importance. Principal areas of interest include: - Structure and dynamics of biological macromolecules - Membrane biophysics and ion channels - Cell biophysics and organisation - Macromolecular assemblies - Biophysical methods and instrumentation - Advanced microscopics - System dynamics.
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