高柔性质子化生物分子中碳-碳网络的1h检测表征

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biomolecular NMR Pub Date : 2023-06-08 DOI:10.1007/s10858-023-00415-6
Salima Bahri, Adil Safeer, Agnes Adler, Hanneke Smedes, Hugo van Ingen, Marc Baldus
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引用次数: 4

摘要

在过去的三十年中,固态核磁共振的范围已经扩展到探索复杂的生物分子,从大的蛋白质组装到原子水平分辨率的完整细胞。这种大分子的多样性往往具有高度灵活的成分,其不溶性环境阻碍了使用溶液核磁共振来研究它们的结构和相互作用。虽然高分辨率魔角旋转(HR-MAS)探针提供了在固体中基于梯度的1h检测光谱的能力,但这种探针不常用于常规的MAS核磁共振实验。因此,大多数对柔性体系的探索都需要13c检测实验、部分渗透系统的使用或超快速MAS。在这里,我们探索质子检测脉冲方案探测通过键13C-13C网络,以宽带方式研究移动蛋白侧链以及多糖。我们展示了使用这种方案来研究微管相关蛋白(MAP) tau和人微管(MTs)的混合物,以及真菌裂叶菌(Schizophyllum commune)的细胞壁,使用2D和3D光谱,以显示其在高和超高磁场下使用标准快速旋转MAS探针获得明确相关性的可行性。
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1H-detected characterization of carbon–carbon networks in highly flexible protonated biomolecules using MAS NMR

In the last three decades, the scope of solid-state NMR has expanded to exploring complex biomolecules, from large protein assemblies to intact cells at atomic-level resolution. This diversity in macromolecules frequently features highly flexible components whose insoluble environment precludes the use of solution NMR to study their structure and interactions. While High-resolution Magic-Angle Spinning (HR-MAS) probes offer the capacity for gradient-based 1H-detected spectroscopy in solids, such probes are not commonly used for routine MAS NMR experiments. As a result, most exploration of the flexible regime entails either 13C-detected experiments, the use of partially perdeuterated systems, or ultra-fast MAS. Here we explore proton-detected pulse schemes probing through-bond 13C–13C networks to study mobile protein sidechains as well as polysaccharides in a broadband manner. We demonstrate the use of such schemes to study a mixture of microtubule-associated protein (MAP) tau and human microtubules (MTs), and the cell wall of the fungus Schizophyllum commune using 2D and 3D spectroscopy, to show its viability for obtaining unambiguous correlations using standard fast-spinning MAS probes at high and ultra-high magnetic fields.

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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
期刊最新文献
Perspective: on the importance of extensive, high-quality and reliable deposition of biomolecular NMR data in the age of artificial intelligence. 19F NMR relaxation of buried tryptophan side chains suggest anisotropic rotational diffusion of the protein RfaH. Pitfalls in measurements of R1 relaxation rates of protein backbone 15N nuclei. Towards cost-effective side-chain isotope labelling of proteins expressed in human cells. Optimising in-cell NMR acquisition for nucleic acids.
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