分子对接方法在内分泌干扰物研究中的应用综述

Q3 Biochemistry, Genetics and Molecular Biology Journal of Applied Biotechnology Reports Pub Date : 2020-06-13 DOI:10.30491/JABR.2020.108287
R. Satpathy
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引用次数: 6

摘要

内分泌干扰物(EDCs)会干扰激素受体,并与各种不良健康影响有关。因此,全球对这些物质越来越关注。释放到环境中的许多外源性物质被归类为EDC,对活体物种的发育和生殖功能产生不利影响。这些物质的作用模式直接或间接地与激素受体结合,并异常地控制激素活性。然而,为了通过实验分析这些物质的影响,存在着重大挑战,因为它与实验成本和性能时间有关。因此,该研究的生物信息学基础被许多研究人员用作实验方法的替代方法。目前流行的计算方法,如分子对接,用于预测EDC对内分泌受体的影响。分子对接方法使用EDCs作为配体,激素受体蛋白作为靶标,并通过计算评估结合亲和力、构象变化和稳定性。此外,这也是理解结构和功能方面的最终线索。在这篇综述中,通过叙述文献,具体讨论了生物信息学资源和分子对接方法在评估毒性、结合亲和力、潜在内分泌干扰物质分类方面的应用。
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Application of Molecular Docking Methods on Endocrine Disrupting Chemicals: A Review
Endocrine-disrupting chemicals (EDCs) interfere with hormone receptors and are associated with a variety of adverse health effects. Therefore, there is a rising global concern about these substances. Numerous xenobiotic substances released into the environment are classified into EDCs that adversely affect the developmental and reproductive functions of living species. The mode of the action of these substances are directly or indirectly binding to the hormone receptors and abnormally controls the hormonal activity. However, major challenges exist in order to analyse the effect of these substances experimentally as it is associated with experimental costs and performance time. Therefore, the bioinformatics basis of the study is used as an alternative to experimental approaches by many researchers. Popular computational methods such as molecular docking is currently used to predict the effect of the EDCs on the endocrine receptor. Molecular docking method uses the EDCs as ligand and hormonal receptor proteins as the target and computationally evaluates the binding affinity, conformational changes and stability. Also, this is the ultimate leads to understand the structural and functional aspects. In this review, specifically the bioinformatics resources and implementation of molecular docking methods towards the evaluation of toxicity, binding affinity, classification of the potential endocrine disrupting substances have been discussed by narrating the literature.
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来源期刊
Journal of Applied Biotechnology Reports
Journal of Applied Biotechnology Reports Biochemistry, Genetics and Molecular Biology-Biotechnology
CiteScore
1.90
自引率
0.00%
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0
期刊介绍: The Journal of Applied Biotechnology Reports (JABR) publishes papers describing experimental work relating to all fundamental issues of biotechnology including: Cell Biology, Genetics, Microbiology, Immunology, Molecular Biology, Biochemistry, Embryology, Immunogenetics, Cell and Tissue Culture, Molecular Ecology, Genetic Engineering and Biological Engineering, Bioremediation and Biodegradation, Bioinformatics, Biotechnology Regulations, Pharmacogenomics, Gene Therapy, Plant, Animal, Microbial and Environmental Biotechnology, Nanobiotechnology, Medical Biotechnology, Biosafety, Biosecurity, Bioenergy, Biomass, Biomaterials and Biobased Chemicals and Enzymes. Journal of Applied Biotechnology Reports promotes a special emphasis on: -Improvement methods in biotechnology -Optimization process for high production in fermentor systems -Protein and enzyme engineering -Antibody engineering and monoclonal antibody -Molecular farming -Bioremediation -Immobilizing methods -biocatalysis
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