为了确定一个物种的精确生长状态,重新考察和定义回归率

IF 1.8 4区 生物学 Q3 BIOPHYSICS Journal of Biological Physics Pub Date : 2023-03-22 DOI:10.1007/s10867-023-09628-0
Ayan Paul, Neelakshi Chatterjee, Sabyasachi Bhattacharya
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引用次数: 0

摘要

生长曲线模型在量化生物过程的生长方面发挥着重要作用,在所有学科中都有巨大的实际应用。在这一领域,最常用的衡量物种适合度的生长指标是“相对增长率”。不同的生长规律,如指数型、logistic型、Gompertz型、幂型和广义Gompertz型或广义logistic型,可以根据相对增长率(RGR)对大小或时间的单调行为来表征。因此,在这种情况下,可以真正通过RGR来确定物种适应度。然而,在自然界中,RGR往往是非单调的,特别是钟形的,特别是在物种适应新环境的情况下[1]。在这种情况下,物种可能在两个不同的时间点经历相同的适应度(RGR)。该RGR函数无法确定物种的准确生长和成熟状态。[2]提出的瞬时成熟率(IMR)有助于确定物种的正确成熟状态。然而,度量的IMR存在严重的缺陷;(i)对于一个特定参数的所有非整数值,IMR是难以处理的。(ii)测量取决于模型参数。IMR的数学表达式中有一个实验者不知道的术语“承载能力”。(三)注意到,为了确定一个物种的确切生长状况,还必须了解当种群偏离其承载能力的平衡位置时的反应。这是种群生物学中的一个既定概念,俗称回报率。然而,IMR并没有提供稳态下物种偏转率的信息。因此,我们提出了一个与物种回归率相关的新的生长度量,称为“相对相对增长率的反转”(以下简称RRRGR),它被视为IMR的代理,具有类似的数学性质。最后,我们引入了一个随机的RRRGR模型来精确描述物种的生长和成熟状态。我们通过数值模拟和真实鱼类数据来说明该模型。我们相信,本研究将有助于渔业生物学家调节有利的生长条件,使该物种以最佳的努力达到稳定的状态。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Revisiting and redefining return rate for determination of the precise growth status of a species

Growth curve models play an instrumental role in quantifying the growth of biological processes and have immense practical applications across all disciplines. The most popular growth metric to capture the species fitness is the “Relative Growth Rate” in this domain. The different growth laws, such as exponential, logistic, Gompertz, power, and generalized Gompertz or generalized logistic, can be characterized based on the monotonic behavior of the relative growth rate (RGR) to size or time. Thus, in this case, species fitness can be determined truly through RGR. However, in nature, RGR is often non-monotonic and specifically bell-shaped, especially in the situation when a species is adapting to a new environment [1]. In this case, species may experience with the same fitness (RGR) for two different time points. The species precise growth and maturity status cannot be determined from this RGR function. The instantaneous maturity rate (IMR), as proposed by [2], helps to determine the correct maturity status of the species. Nevertheless, the metric IMR suffers from severe drawbacks; (i) IMR is intractable for all non-integer values of a specific parameter. (ii) The measure depends on a model parameter. The mathematical expression of IMR possesses the term “carrying capacity” which is unknown to the experimenter. (iii) Note that for identifying the precise growth status of a species, it is also necessary to understand its response when the populations are deflected from their equilibrium position at carrying capacity. This is an established concept in population biology, popularly known as the return rate. However, IMR does not provide information on the species deflection rate at the steady state. Hence, we propose a new growth measure connected with the species return rate, termed the “reverse of relative of relative growth rate” (henceforth, RRRGR), which is treated as a proxy for the IMR, having similar mathematical properties. Finally, we introduce a stochastic RRRGR model for specifying precise species growth and status of maturity. We illustrate the model through numerical simulations and real fish data. We believe that this study would be helpful for fishery biologists in regulating the favorable conditions of growth so that the species can reach a steady state with optimum effort.

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来源期刊
Journal of Biological Physics
Journal of Biological Physics 生物-生物物理
CiteScore
3.00
自引率
5.60%
发文量
20
审稿时长
>12 weeks
期刊介绍: Many physicists are turning their attention to domains that were not traditionally part of physics and are applying the sophisticated tools of theoretical, computational and experimental physics to investigate biological processes, systems and materials. The Journal of Biological Physics provides a medium where this growing community of scientists can publish its results and discuss its aims and methods. It welcomes papers which use the tools of physics in an innovative way to study biological problems, as well as research aimed at providing a better understanding of the physical principles underlying biological processes.
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