一个开源软件生态系统,用于超快电子散射数据的交互式探索

Laurent P. René de Cotret, Martin R. Otto, Mark J. Stern, Bradley J. Siwick
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引用次数: 12

摘要

本文详细介绍了一个软件生态系统,包括三个免费和开源的Python包,用于处理原始的超快电子散射(UES)数据并交互式地探索处理后的数据。第一个包iris是用于UES数据交互探索的图形用户界面程序和库。在底层,iris使用npstreams,这是numpy对流数组处理的扩展,用于高吞吐量并行数据缩减。最后,我们介绍了scikit-ued,一个用于分析UES数据的可重用例程和数据结构库,包括专门的图像处理算法、仿真例程和晶体结构操作操作。本文重点介绍了并行数据约简、图像配准、交互式探索等三种方法的一些特点。这些软件包经过了充分的测试和记录,并在宽松的许可证下发布。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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An open-source software ecosystem for the interactive exploration of ultrafast electron scattering data

This paper details a software ecosystem comprising three free and open-source Python packages for processing raw ultrafast electron scattering (UES) data and interactively exploring the processed data. The first package, iris, is graphical user-interface program and library for interactive exploration of UES data. Under the hood, iris makes use of npstreams, an extensions of numpy to streaming array-processing, for high-throughput parallel data reduction. Finally, we present scikit-ued, a library of reusable routines and data structures for analysis of UES data, including specialized image processing algorithms, simulation routines, and crystal structure manipulation operations. In this paper, some of the features or all three packages are highlighted, such as parallel data reduction, image registration, interactive exploration. The packages are fully tested and documented and are released under permissive licenses.

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Advanced Structural and Chemical Imaging
Advanced Structural and Chemical Imaging Medicine-Radiology, Nuclear Medicine and Imaging
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