{"title":"一种评价有序序列的新方法:在microRNA靶标预测中的应用","authors":"Debarka Sengupta, S. Bandyopadhyay, U. Maulik","doi":"10.1145/1722024.1722067","DOIUrl":null,"url":null,"abstract":"Sensitivity and specificity are the most widely used statistics for measuring the performance of a binary classification test. They stand vastly meaningful for variety of use cases where the classifying tests are affordable. But unfortunately, there is a legion of problems arriving from different streams of natural sciences where the screening test is too expensive to render for all the predicted objects. Thus, the trend has been for scientists to calculate the sensitivity and the specificity of a binary classification test based on a handful of experimentally proven facts, which is theoretically uncertain. In this article a novel measure is proposed that assigns importance to multiple ordered lists, taking into account the share of majority voted ranked pairs of elements a list contains. A real life bioinformatic application is demonstrated in the domain of microRNA target prediction where a number of algorithms exist. Using the proposed measure, we aim to assign certain weight to each algorithm that conveys its reliability with respect to the rest.","PeriodicalId":39379,"journal":{"name":"In Silico Biology","volume":"8 1","pages":"37"},"PeriodicalIF":0.0000,"publicationDate":"2010-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1145/1722024.1722067","citationCount":"6","resultStr":"{\"title\":\"A novel measure for evaluating an ordered list: application in microRNA target prediction\",\"authors\":\"Debarka Sengupta, S. Bandyopadhyay, U. Maulik\",\"doi\":\"10.1145/1722024.1722067\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Sensitivity and specificity are the most widely used statistics for measuring the performance of a binary classification test. They stand vastly meaningful for variety of use cases where the classifying tests are affordable. But unfortunately, there is a legion of problems arriving from different streams of natural sciences where the screening test is too expensive to render for all the predicted objects. Thus, the trend has been for scientists to calculate the sensitivity and the specificity of a binary classification test based on a handful of experimentally proven facts, which is theoretically uncertain. In this article a novel measure is proposed that assigns importance to multiple ordered lists, taking into account the share of majority voted ranked pairs of elements a list contains. A real life bioinformatic application is demonstrated in the domain of microRNA target prediction where a number of algorithms exist. Using the proposed measure, we aim to assign certain weight to each algorithm that conveys its reliability with respect to the rest.\",\"PeriodicalId\":39379,\"journal\":{\"name\":\"In Silico Biology\",\"volume\":\"8 1\",\"pages\":\"37\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2010-02-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1145/1722024.1722067\",\"citationCount\":\"6\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"In Silico Biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1145/1722024.1722067\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"Medicine\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"In Silico Biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/1722024.1722067","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Medicine","Score":null,"Total":0}
A novel measure for evaluating an ordered list: application in microRNA target prediction
Sensitivity and specificity are the most widely used statistics for measuring the performance of a binary classification test. They stand vastly meaningful for variety of use cases where the classifying tests are affordable. But unfortunately, there is a legion of problems arriving from different streams of natural sciences where the screening test is too expensive to render for all the predicted objects. Thus, the trend has been for scientists to calculate the sensitivity and the specificity of a binary classification test based on a handful of experimentally proven facts, which is theoretically uncertain. In this article a novel measure is proposed that assigns importance to multiple ordered lists, taking into account the share of majority voted ranked pairs of elements a list contains. A real life bioinformatic application is demonstrated in the domain of microRNA target prediction where a number of algorithms exist. Using the proposed measure, we aim to assign certain weight to each algorithm that conveys its reliability with respect to the rest.
In Silico BiologyComputer Science-Computational Theory and Mathematics
CiteScore
2.20
自引率
0.00%
发文量
1
期刊介绍:
The considerable "algorithmic complexity" of biological systems requires a huge amount of detailed information for their complete description. Although far from being complete, the overwhelming quantity of small pieces of information gathered for all kind of biological systems at the molecular and cellular level requires computational tools to be adequately stored and interpreted. Interpretation of data means to abstract them as much as allowed to provide a systematic, an integrative view of biology. Most of the presently available scientific journals focus either on accumulating more data from elaborate experimental approaches, or on presenting new algorithms for the interpretation of these data. Both approaches are meritorious.