链霉素类陆霉素簇组织结构的异同

L. Polishchuk, V. Lukyanchuk
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摘要

的目标。这项工作的目的是建立链霉菌中陆霉素簇的初级结构和组织的相似性水平。方法。陆霉素生物合成基因AF080235、1、KJ645792.1、HQ828984.1链生簇的核苷酸序列和注释以及菌株S. cyanogenus S136、S. globisporus 1911 - 4crt的基因组信息可在GenBank免费获取。利用服务器NSBI的BLASTN程序对链霉菌进行核苷酸序列分析。结果。一些可能的lan-cluster基因(prx, lanW, lanYR)的远程定位已经确立。相似的lndU / lanU基因和lndY / lanY基因的序列相似性最小,而lndY / lanY基因是陆霉素生物合成所必需的。结果表明,蓝藻属S136的lan-cluster可能位于该菌株的染色体皮质区之外。从地球上不同大陆不同生态位的土壤样本中分离出产生陆霉素的链霉菌。结论。lan-和lnd-簇的组织差异表现在许多基因(prx, lanW, lanYR)的远程定位上。
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Similarity and difference of organizations of streptomycetic landomycins clusters
Aim. The aim of the work is to establish the level of similarity of the primary structure and organization of landomycin clusters of streptomycetes. Methods. Information on nucleotide sequences and annotations of streptomycetic clusters of landomycin biosynthesis genes AF080235,1, KJ645792.1, HQ828984.1 and genomes of strains S. cyanogenus S136, S. globisporus 1912-4Crt is freely available in GenBank. Analysis of the nucleotide sequences of streptomycetes was performed using the program BLASTN from the server NSBI. Results. The remote localization of a number of probable lan-cluster genes (prx, lanW, lanYR) has been established. The sequences of similar lndU / lanU genes and lndY / lanY genes, which are not necessary for landomycin biosynthesis, have been shown to be the least similar. It is shown that the lan-cluster of S. cyanogenus S136 is expected to be localized outside the cortical region of the chromosome of the strain. Landomycin-producing streptomycetes are isolated from soil samples from different ecological niches on different continents of the planet. Conclusions. The difference in the organization of lan- and lnd-clusters is expressed in the remote localization of a number of genes (prx, lanW, lanYR).
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