trnH-psbA区在乌头疫霉及其相关类群DNA条形码中的应用

Y. Tynkevich, D. V. Biliay, R. Volkov
{"title":"trnH-psbA区在乌头疫霉及其相关类群DNA条形码中的应用","authors":"Y. Tynkevich, D. V. Biliay, R. Volkov","doi":"10.7124/feeo.v31.1500","DOIUrl":null,"url":null,"abstract":"Aim. The genus Aconitum is represented in the Carpathian region by a significant number of endemic species. Some of these species, in particular A. pseudanthora and A. jacquinii, are included in the Red List of Ukraine. However, their taxonomic status and consequently the importance of conserving their natural resources remain uncertain. DNA barcoding techniques, e.g., the application of molecular markers based on variable regions of the chloroplast genome can help clarify these questions. Methods. DNA isolation, PCR amplification, sequencing of PCR products, phylogenetic analysis. Results. The psbA-trnH intergenic spacer region of A. pseudanthora and A. jacquinii specimens from Western Ukraine was amplified and sequenced. It is shown that the spacer sequences for these two species are identical, but differ in short indels and nucleotide substitutions from the psbA-trnH sequences of A. anthora s.l. specimens from Western Europe and China. Phylogenetic analyzes showed the phylogenetic affinity of the members of the A. anthora complex to the subgenus Lycoctonum. Conclusions. The use of the psbA-trnH intergenic spacer region for DNA barcoding makes it possible to unambiguously distinguish samples of A. jacquinii and A. pseudanthora from western Ukraine from samples of A. anthora s.l. of other geographical origins. The results obtained confirm the reticular nature of the evolution in the genus Aconitum.","PeriodicalId":12181,"journal":{"name":"Faktori eksperimental'noi evolucii organizmiv","volume":"2012 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":"{\"title\":\"Utility of the trnH–psbA region for DNA barcoding of Aconitum anthora L. and related taxa\",\"authors\":\"Y. Tynkevich, D. V. Biliay, R. Volkov\",\"doi\":\"10.7124/feeo.v31.1500\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Aim. The genus Aconitum is represented in the Carpathian region by a significant number of endemic species. Some of these species, in particular A. pseudanthora and A. jacquinii, are included in the Red List of Ukraine. However, their taxonomic status and consequently the importance of conserving their natural resources remain uncertain. DNA barcoding techniques, e.g., the application of molecular markers based on variable regions of the chloroplast genome can help clarify these questions. Methods. DNA isolation, PCR amplification, sequencing of PCR products, phylogenetic analysis. Results. The psbA-trnH intergenic spacer region of A. pseudanthora and A. jacquinii specimens from Western Ukraine was amplified and sequenced. It is shown that the spacer sequences for these two species are identical, but differ in short indels and nucleotide substitutions from the psbA-trnH sequences of A. anthora s.l. specimens from Western Europe and China. Phylogenetic analyzes showed the phylogenetic affinity of the members of the A. anthora complex to the subgenus Lycoctonum. Conclusions. The use of the psbA-trnH intergenic spacer region for DNA barcoding makes it possible to unambiguously distinguish samples of A. jacquinii and A. pseudanthora from western Ukraine from samples of A. anthora s.l. of other geographical origins. The results obtained confirm the reticular nature of the evolution in the genus Aconitum.\",\"PeriodicalId\":12181,\"journal\":{\"name\":\"Faktori eksperimental'noi evolucii organizmiv\",\"volume\":\"2012 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Faktori eksperimental'noi evolucii organizmiv\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.7124/feeo.v31.1500\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Faktori eksperimental'noi evolucii organizmiv","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.7124/feeo.v31.1500","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 4

摘要

的目标。乌头属在喀尔巴阡地区以大量的特有物种为代表。其中一些物种,特别是A. pseudanthora和A. jacquinii,被列入乌克兰红色名录。然而,它们的分类地位和因此保护其自然资源的重要性仍然不确定。DNA条形码技术,例如基于叶绿体基因组可变区域的分子标记的应用,可以帮助澄清这些问题。方法。DNA分离,PCR扩增,PCR产物测序,系统发育分析。结果。对产自乌克兰西部的伪疫霉(A. pseudanthora)和雅奎尼霉(A. jacquinii)标本的psbA-trnH基因间隔区进行扩增和测序。结果表明,这两个物种的间隔序列是相同的,但与来自西欧和中国的A. anthora s.l.标本的psbA-trnH序列在短序列和核苷酸替换上存在差异。系统发育分析显示了疫霉复合体成员与Lycoctonum亚属的亲缘关系。结论。利用psbA-trnH基因间间隔区进行DNA条形码,可以明确区分乌克兰西部的雅奎尼和假疫霉与其他地理来源的疫霉样品。所获得的结果证实了乌头属进化的网状性质。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Utility of the trnH–psbA region for DNA barcoding of Aconitum anthora L. and related taxa
Aim. The genus Aconitum is represented in the Carpathian region by a significant number of endemic species. Some of these species, in particular A. pseudanthora and A. jacquinii, are included in the Red List of Ukraine. However, their taxonomic status and consequently the importance of conserving their natural resources remain uncertain. DNA barcoding techniques, e.g., the application of molecular markers based on variable regions of the chloroplast genome can help clarify these questions. Methods. DNA isolation, PCR amplification, sequencing of PCR products, phylogenetic analysis. Results. The psbA-trnH intergenic spacer region of A. pseudanthora and A. jacquinii specimens from Western Ukraine was amplified and sequenced. It is shown that the spacer sequences for these two species are identical, but differ in short indels and nucleotide substitutions from the psbA-trnH sequences of A. anthora s.l. specimens from Western Europe and China. Phylogenetic analyzes showed the phylogenetic affinity of the members of the A. anthora complex to the subgenus Lycoctonum. Conclusions. The use of the psbA-trnH intergenic spacer region for DNA barcoding makes it possible to unambiguously distinguish samples of A. jacquinii and A. pseudanthora from western Ukraine from samples of A. anthora s.l. of other geographical origins. The results obtained confirm the reticular nature of the evolution in the genus Aconitum.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Productivity of parental inbred lines – components of maize hybrids depending on plant density and treatment with biopreparations under conditions of drip irrigation Study on ubiquitination of proteins of the MRPS18 family in vitro Agrobacterium-mediated transformation of spring camelina with yeast genes of trehalose biosynthesis The role of different stem segments in the deposition of water-soluble carbohydrates in winter wheat varieties under drought conditions Inheritance of quantitative traits in F1 hybrids of einkorn wheat
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1