基于meda的数字微流控生物芯片上均匀液滴路由性能优化

Sarit Chakraborty, Susanta Chakraborty
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引用次数: 7

摘要

数字微流控生物芯片(dmfb)具有自动化、可重构、操作成本低、结果准确等特点。这种芯片实验室(Loc)现在广泛用于护理点诊断和其他监测应用。微或纳米(10^-6或10^-9)升体积的液滴在这种芯片上的布线,由于芯片上存在的微流体模块造成的阻塞,增加了一些关键挑战。基于微电极点阵列(MEDA)的DMFB架构可以促进无交叉污染的路由,并消除传统DMF芯片的其他路由问题。本文提出了一种基于MEDA的DMFB架构的启发式路由技术,以解决由于网络重叠、干扰阻塞和冲突网络形成的死锁区而导致的路由复杂性。我们对MEDA芯片上基于不同区域的液滴运动进行了分类,并推导了一个名为窥探指数(SIn)的度量来改善第一阶段液滴的路由性能。其次,考虑MEDA平台的不同约束条件,采用穷举搜索方法寻找剩余网络的路由路径。最后,我们计算了另一种称为“区域压实系数”(ZCF)的措施,以克服堵塞广泛的路线。基准套件I和III的实验结果表明,与早期的方法相比,我们提出的技术显着减少了最新到达时间,平均分析执行时间和使用的细胞数量。
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Routing Performance Optimization for Homogeneous Droplets on MEDA-based Digital Microfluidic Biochips
Digital Microfluidic based Biochips (DMFBs) are capable of automation, re-configurable, low operational cost and accuracy of results. Such Lab-on-Chips (Loc's) are now extensively used in point of care diagnosis and other monitoring applications. Routing of micro or nano (10^-6 or 10^-9) litre volume of droplets on such chips elevate few critical challenges due to the blockages caused by microfluidic modules present on the chip. Micro-Electrode Dot Array (MEDA) based architecture of DMFB can facilitate cross contamination free routing and eradicate other routing issues over conventional DMF chips. This paper proposes a novel heuristic routing technique for MEDA based DMFB architecture to tackle routing complexities due to overlapping nets, interfering blockages and deadlock zones formed by the conflicting nets. We have categorized various region based movements of droplet on MEDA chip and derived a metric named Snooping Index (SIn) to improve the routing performance of the droplets in first phase. Next an exhaustive search is applied to find the routing path for the remaining nets considering different constraints specific to MEDA platform. Finally we have computed another measure called 'Zone Compaction Factor' (ZCF) to overcome blockage extensive route paths. Experimental results on benchmark suite I and III show our proposed technique significantly reduces latest arrival time, average assay execution time and number of used cells as compared with earlier methods.
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