{"title":"褐腐菌中α- l -阿拉伯糖醛酸苷酶GH51的鉴定","authors":"Rikako Tsukida, Makoto Yoshida, Satoshi Kaneko","doi":"10.5458/jag.jag.JAG-2022_0009","DOIUrl":null,"url":null,"abstract":"<p><p>Woody biomass is anticipated to be a resource for a decarbonized society, but the difficulty of isolating woody components is a significant challenge. Brown-rot fungi, a type of wood rotting fungi, decompose hemicellulose particularly efficiently. However, there are few reports on the hemicellulases from brown-rot fungi. An α-L-arabinofuranosidase belonging to glycoside hydrolase family 51 (GH51) from the brown-rot fungus <i>Gloeophyllum trabeum</i> (<i>Gt</i>Abf51A) was cloned and characterized in the present study. Analyses of the phylogeny of GH51 enzymes in wood rotting fungi revealed the existence of two groups, intercellular and extracellular enzymes. After deglycosylation, the recombinant <i>Gt</i>Abf51A produced by <i>Pichia pastoris</i> appeared on SDS-PAGE as approximately 71,777 daltons, which is the expected molecular weight based on the amino acid sequence of <i>Gt</i>Abf51A. Maximum enzyme activity occurred between pH 2.2 and 4.0 and at 50 °C, while it was stable between pH 2.2 and 10.0 and up to 40 °C. Due to the presence of a signal peptide, <i>Gt</i>Abf51A was thought to hydrolyze polysaccharide containing arabinose. However, the hydrolysis rate of arabinosyl linkages in polysaccharides was only 3-5 % for arabinoxylan and 18 % for arabinan. <i>Gt</i>Abf51A, in contrast, efficiently hydrolyzed arabinoxylooligosaccharides, particularly <i>O</i>-α-L-arabinofuranosyl-(1→3)-<i>O</i>-β-D-xylopyranosyl-(1→4)-β-D-xylopyranose, which is the principal product of GH10 β-xylanase. These data suggest that <i>Gt</i>Abf51A cooperates with other xylan-degrading enzymes, such as β-xylanase, to degrade xylan in nature.</p>","PeriodicalId":14999,"journal":{"name":"Journal of applied glycoscience","volume":null,"pages":null},"PeriodicalIF":1.2000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/a0/08/70_jag.JAG-2022_0009.PMC10074032.pdf","citationCount":"0","resultStr":"{\"title\":\"Characterization of an α-L-Arabinofuranosidase GH51 from the Brown-rot Fungus <i>Gloeophyllum trabeum</i>.\",\"authors\":\"Rikako Tsukida, Makoto Yoshida, Satoshi Kaneko\",\"doi\":\"10.5458/jag.jag.JAG-2022_0009\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Woody biomass is anticipated to be a resource for a decarbonized society, but the difficulty of isolating woody components is a significant challenge. Brown-rot fungi, a type of wood rotting fungi, decompose hemicellulose particularly efficiently. However, there are few reports on the hemicellulases from brown-rot fungi. An α-L-arabinofuranosidase belonging to glycoside hydrolase family 51 (GH51) from the brown-rot fungus <i>Gloeophyllum trabeum</i> (<i>Gt</i>Abf51A) was cloned and characterized in the present study. Analyses of the phylogeny of GH51 enzymes in wood rotting fungi revealed the existence of two groups, intercellular and extracellular enzymes. After deglycosylation, the recombinant <i>Gt</i>Abf51A produced by <i>Pichia pastoris</i> appeared on SDS-PAGE as approximately 71,777 daltons, which is the expected molecular weight based on the amino acid sequence of <i>Gt</i>Abf51A. Maximum enzyme activity occurred between pH 2.2 and 4.0 and at 50 °C, while it was stable between pH 2.2 and 10.0 and up to 40 °C. Due to the presence of a signal peptide, <i>Gt</i>Abf51A was thought to hydrolyze polysaccharide containing arabinose. However, the hydrolysis rate of arabinosyl linkages in polysaccharides was only 3-5 % for arabinoxylan and 18 % for arabinan. <i>Gt</i>Abf51A, in contrast, efficiently hydrolyzed arabinoxylooligosaccharides, particularly <i>O</i>-α-L-arabinofuranosyl-(1→3)-<i>O</i>-β-D-xylopyranosyl-(1→4)-β-D-xylopyranose, which is the principal product of GH10 β-xylanase. These data suggest that <i>Gt</i>Abf51A cooperates with other xylan-degrading enzymes, such as β-xylanase, to degrade xylan in nature.</p>\",\"PeriodicalId\":14999,\"journal\":{\"name\":\"Journal of applied glycoscience\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.2000,\"publicationDate\":\"2023-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/a0/08/70_jag.JAG-2022_0009.PMC10074032.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of applied glycoscience\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5458/jag.jag.JAG-2022_0009\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of applied glycoscience","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5458/jag.jag.JAG-2022_0009","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
木质生物质有望成为脱碳社会的一种资源,但分离木质成分的困难是一个重大挑战。褐腐真菌是一种木材腐烂真菌,它能特别有效地分解半纤维素。然而,关于褐腐菌半纤维素酶的报道很少。本研究从褐腐菌Gloeophyllum trabeum (GtAbf51A)中克隆并鉴定了一种α-L-arabinofuranosidase (α-L-arabinofuranosidase),属于糖苷水解酶51家族(GH51)。对腐木真菌GH51酶的系统发育分析表明,GH51酶可分为胞间酶和胞外酶两类。去糖基化后,毕赤酵母重组GtAbf51A在SDS-PAGE上的分子量约为71777道尔顿,这是基于GtAbf51A氨基酸序列的预期分子量。酶活性在pH 2.2 ~ 4.0和50℃时达到最大值,在pH 2.2 ~ 10.0和高达40℃时保持稳定。由于信号肽的存在,GtAbf51A被认为可以水解含有阿拉伯糖的多糖。然而,阿拉伯木聚糖多糖中阿拉伯糖基键的水解率仅为3- 5%,阿拉伯糖聚糖为18%。相比之下,GtAbf51A能有效水解阿拉伯糖低聚糖,特别是O-α- l-阿拉伯糖糠基-(1→3)-O-β- d -木吡喃基-(1→4)-β- d -木吡喃糖,这是GH10 β-木聚糖酶的主要产物。这些数据表明GtAbf51A在自然界中与其他木聚糖降解酶如β-木聚糖酶协同降解木聚糖。
Characterization of an α-L-Arabinofuranosidase GH51 from the Brown-rot Fungus Gloeophyllum trabeum.
Woody biomass is anticipated to be a resource for a decarbonized society, but the difficulty of isolating woody components is a significant challenge. Brown-rot fungi, a type of wood rotting fungi, decompose hemicellulose particularly efficiently. However, there are few reports on the hemicellulases from brown-rot fungi. An α-L-arabinofuranosidase belonging to glycoside hydrolase family 51 (GH51) from the brown-rot fungus Gloeophyllum trabeum (GtAbf51A) was cloned and characterized in the present study. Analyses of the phylogeny of GH51 enzymes in wood rotting fungi revealed the existence of two groups, intercellular and extracellular enzymes. After deglycosylation, the recombinant GtAbf51A produced by Pichia pastoris appeared on SDS-PAGE as approximately 71,777 daltons, which is the expected molecular weight based on the amino acid sequence of GtAbf51A. Maximum enzyme activity occurred between pH 2.2 and 4.0 and at 50 °C, while it was stable between pH 2.2 and 10.0 and up to 40 °C. Due to the presence of a signal peptide, GtAbf51A was thought to hydrolyze polysaccharide containing arabinose. However, the hydrolysis rate of arabinosyl linkages in polysaccharides was only 3-5 % for arabinoxylan and 18 % for arabinan. GtAbf51A, in contrast, efficiently hydrolyzed arabinoxylooligosaccharides, particularly O-α-L-arabinofuranosyl-(1→3)-O-β-D-xylopyranosyl-(1→4)-β-D-xylopyranose, which is the principal product of GH10 β-xylanase. These data suggest that GtAbf51A cooperates with other xylan-degrading enzymes, such as β-xylanase, to degrade xylan in nature.