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Metabolic Profiling of Rat Kidney Tissue Following Administration of D-Allulose. 服用 D-阿洛糖后大鼠肾组织的代谢谱分析
IF 1.2 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-20 eCollection Date: 2024-01-01 DOI: 10.5458/jag.jag.JAG-2023_0019
Akane Kanasaki, Misato Niibo, Tetsuo Iida

D-Allulose (D-psicose) is a rare sugar and a C-3 epimer of D-fructose. D-Allulose has been reported to have several health benefits via its alteration of both glucose and lipid metabolism. It was previously reported that D-allulose alters the hepatic metabolomic profile. Although the kidneys are crucial organs in metabolic regulation, the effects of D-allulose on renal metabolism have not yet been established. Therefore, this study was designed to capture the overall metabolic response in the kidneys to D-allulose. This was done by providing an AIN-93G diet to Wistar rats, with or without 3 % D-allulose, for four weeks. Renal tissue and blood samples were collected after a 3-hour fasting for evaluation of the renal metabolic profile and their related plasma parameters. D-Allulose increased renal weight without changes in the plasma indices associated with reduced renal function. Metabolic profiling identified a total of 264 peaks. As the contribution rate was too low in the principal component analysis results of the metabolic profiling results, we evaluated the metabolites that were significantly different between two groups and identified 23 up-regulated and 26 down-regulated metabolites in the D-allulose group. D-Allulose also had significant influence on several metabolites involved in glucose metabolism, amino acid metabolism, and purine metabolism. Moreover, the levels of trimethylamine N-oxide and symmetric dimethylarginine, which are associated with several diseases such as chronic kidney disease and cardiovascular disease decreased following D-allulose diets. This study showed that D-allulose affects the renal metabolic profile, and our findings will help elucidate the function of D-allulose.

D-阿洛糖(D-糙米糖)是一种稀有糖类,也是 D-果糖的 C-3 二聚体。据报道,D-阿洛糖通过改变葡萄糖和脂质代谢对健康有多种益处。以前曾有报道称,D-阿洛糖能改变肝脏代谢组谱。虽然肾脏是代谢调节的关键器官,但 D-阿洛糖对肾脏代谢的影响尚未确定。因此,本研究旨在捕捉肾脏对 D-阿洛糖的整体代谢反应。具体方法是为 Wistar 大鼠提供含有或不含有 3% D-阿洛糖的 AIN-93G 食物,为期四周。空腹 3 小时后收集肾组织和血液样本,以评估肾脏代谢概况及其相关血浆参数。D-阿洛糖增加了肾脏重量,但与肾功能减退相关的血浆指标没有发生变化。代谢图谱共发现了 264 个峰值。由于代谢轮廓分析结果中主成分分析结果的贡献率太低,我们对两组之间存在显著差异的代谢物进行了评估,发现在 D-阿洛糖组中有 23 个上调代谢物和 26 个下调代谢物。D-阿洛糖还对涉及葡萄糖代谢、氨基酸代谢和嘌呤代谢的多个代谢物产生了显著影响。此外,与慢性肾病和心血管疾病等多种疾病相关的三甲胺 N-氧化物和对称二甲基精氨酸的水平在 D-阿洛糖膳食后也有所下降。这项研究表明,D-阿洛糖会影响肾脏代谢状况,我们的研究结果将有助于阐明 D-阿洛糖的功能。
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引用次数: 0
Substrate Specificity of GH29 α-L-Glucosidases from Cecembia lonarensis. 长寿草 GH29 α-L-葡萄糖苷酶的底物特异性
IF 1.2 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-20 eCollection Date: 2024-01-01 DOI: 10.5458/jag.jag.JAG-2024_0004
Hye-Jin Kang, Takayoshi Tagami, Masayuki Okuyama

We recently found two α-L-glucosidases, which can hydrolyze p-nitrophenyl α-L-glucopyranoside (PNP L-Glc) rather than p-nitrophenyl α-L-fucopyranoside, in glycoside hydrolase family 29. This study evaluated their substrate specificity for p-nitrophenyl α-L-rhamnopyranoside (PNP L-Rha), α-L-quinovopyranoside (PNP L-Qui), and α-L-xylopyranoside (PNP L-Xyl), of which structure is similar to PNP L-Glc. The two α-L-glucosidases had little activity toward PNP L-Rha. They exhibited higher k cat/K m values for PNP L-Qui but smaller for PNP L-Xyl than for PNP L-Glc. The molecular docking studies indicated that these specificities were correlated well with the active-site structure of the α-L-glucosidases. The finding that α-L-quinovoside, which has been suggested to occur in nature, is also a substrate for α-L-glucosidases indicates that this enzyme are not solely dedicated to α-L-glucoside hydrolysis.

最近,我们在糖苷水解酶家族 29 中发现了两种 α-L-葡萄糖苷酶,它们可以水解对硝基苯基 α-L-吡喃葡萄糖苷(PNP L-Glc),而不是对硝基苯基 α-L-吡喃岩藻糖苷。本研究评估了它们对对硝基苯α-L-鼠李糖苷(PNP L-Rha)、α-L-喹诺酮糖苷(PNP L-Qui)和α-L-木酰基吡喃糖苷(PNP L-Xyl)的底物特异性,这些底物的结构与 PNP L-Glc 相似。这两种α-L-葡萄糖苷酶对 PNP L-Rha 的活性很小。它们对 PNP L-Qui 的 k cat/K m 值较高,但对 PNP L-Xyl 的 k cat/K m 值低于对 PNP L-Glc。分子对接研究表明,这些特异性与α-L-葡萄糖苷酶的活性位点结构密切相关。发现α-L-奎诺糖苷也是α-L-葡萄糖苷酶的底物,这表明α-L-葡萄糖苷酶并非只专门水解α-L-葡萄糖苷。
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引用次数: 0
Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 α-Galactosidase Specific for Blood Group B Antigen. 双歧杆菌糖苷水解酶家族 110 α-半乳糖苷酶对血型 B 抗原的特异性晶体结构。
IF 1.2 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-20 eCollection Date: 2024-01-01 DOI: 10.5458/jag.jag.JAG-2024_0005
Toma Kashima, Megumi Akama, Takura Wakinaka, Takatoshi Arakawa, Hisashi Ashida, Shinya Fushinobu

To overcome incompatibility issues and increase the possibility of blood transfusion, technologies that enable efficient conversion of A- and B-type red blood cells to the universal donor O-type is desirable. Although several blood type-converting enzymes have been identified, detailed understanding about their molecular functions is limited. α-Galactosidase from Bifidobacterium bifidum JCM 1254 (AgaBb), belonging to glycoside hydrolase (GH) 110 subfamily A, specifically acts on blood group B antigen. Here we present the crystal structure of AgaBb, including the catalytic GH110 domain and part of the C-terminal uncharacterized regions. Based on this structure, we deduced a possible binding mechanism of blood group B antigen to the active site. Site-directed mutagenesis confirmed that R270 and E380 recognize the fucose moiety in the B antigen. Thermal shift assay revealed that the C-terminal uncharacterized region significantly contributes to protein stability. This region is shared only among GH110 enzymes from B. bifidum and some Ruminococcus species. The elucidation of the molecular basis for the specific recognition of blood group B antigen is expected to lead to the practical application of blood group conversion enzymes in the future.

为了克服血型不相容的问题并增加输血的可能性,我们需要能够将 A 型和 B 型红细胞有效转化为通用供血者 O 型红细胞的技术。来自双歧杆菌 JCM 1254 的 α-半乳糖苷酶(AgaBb)属于糖苷水解酶(GH)110 亚家族 A,专门作用于血型 B 抗原。在这里,我们展示了 AgaBb 的晶体结构,包括 GH110 催化结构域和部分 C 端未表征区域。根据该结构,我们推断了血型 B 抗原与活性位点的可能结合机制。定点突变证实 R270 和 E380 能识别 B 抗原中的岩藻糖分子。热转移试验显示,C-末端的未表征区域对蛋白质的稳定性有重要作用。只有来自双歧杆菌和一些反刍球菌的 GH110 酶共享该区域。阐明特异性识别血型 B 抗原的分子基础有望使血型转换酶在未来得到实际应用。
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引用次数: 0
Effect of Free Cysteine Residues to Serine Mutation on Cellodextrin Phosphorylase 游离半胱氨酸到丝氨酸突变对细胞糊精磷酸化酶的影响
IF 1.1 Pub Date : 2024-05-20 DOI: 10.5458/jag.jag.jag-2023_0011
Tomohiro Kuga, Naoki Sunagawa, K. Igarashi
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引用次数: 0
Thermotolerance Mechanism of Fungal GH6 Cellobiohydrolase. Part I. Characterization of Thermotolerant Mutant from the Basidiomycete Phanerochaete chrysosporium 真菌 GH6 细胞生物水解酶的耐热机制。第一部分:基霉 Phanerochaete chrysosporium 耐热突变体的特征
IF 1.1 Pub Date : 2024-05-20 DOI: 10.5458/jag.jag.jag-2023_0017
Sora Yamaguchi, Naoki Sunagawa, M. Samejima, K. Igarashi
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引用次数: 0
Thermotolerance Mechanism of Fungal GH6 Cellobiohydrolase. Part II. Structural Analysis of Thermotolerant Mutant from the Basidiomycete Phanerochaete chrysosporium 真菌 GH6 Cellobiohydrolase 的耐热机制。第二部分。基霉菌 Phanerochaete chrysosporium 耐热突变体的结构分析
IF 1.1 Pub Date : 2024-05-20 DOI: 10.5458/jag.jag.jag-2023_0018
Sora Yamaguchi, Naoki Sunagawa, M. Samejima, K. Igarashi
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引用次数: 0
Polysaccharides from a Fermented Beverage Induce Nitric Oxide and Cytokines in Murine Macrophage Cell Line 发酵饮料中的多糖诱导小鼠巨噬细胞系中的一氧化氮和细胞因子
IF 1.1 Pub Date : 2024-05-20 DOI: 10.5458/jag.jag.jag-2023_0012
Hideki Okada, Akira Yamamori, Naoki Kawazoe, Keiji Ueno, S. Onodera, Michimasa Hirata
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引用次数: 0
Morphological, Molecular Structural and Physicochemical Characterization of Starch Granules Formed in Endosperm of Rice with Ectopic Overexpression of α-Amylase. 异位过表达α-淀粉酶的水稻胚乳中形成的淀粉颗粒的形态、分子结构和物理化学特征
IF 1.1 Pub Date : 2024-04-20 eCollection Date: 2024-01-01 DOI: 10.5458/jag.jag.JAG-2023_0016
Kuo Zhang, Sumiko Nakamura, Ken-Ichi Ohtsubo, Toshiaki Mitsui

The objective of this study was to characterize the endosperm starch in rice that ectopically overexpressed the α-amylase. Transgenic rice plants, transformed with cauliflower mosaic virus 35S promoter driven AmyI-1 (35S::AmyI-1) and AmyII-4 (35S::AmyII-4), and 10 kDa prolamin promoter driven AmyI-1 (P10::AmyI-1), were cultivated under standard conditions (23 °C, 12 h in the dark/ 26 °C, 12 h in the light), and brown grains were subsequently harvested. Each grain displayed characteristic chalkiness, while electron microanalyzer (EPMA)-SEM images disclosed numerous small pits on the surface of the starch granules, attributable to α-amylase activity. Fluorescence labeling and capillary electrophoresis analysis of starch chain length distribution revealed no significant alterations in the starches of 35S::AmyI-1 and 35S::AmyII-4 transgenic rice compared to the wild-type. Conversely, the extremely short α-glucan chains (DP 2-8) exhibited a dramatic increase in the P10::AmyI-1 starch. Rapid visco-analyzer analysis also identified variations in the chain length distribution of P10::AmyI-1 starch, manifesting as changes in viscosity. Moreover, 1H-NMR analysis uncovered dynamic modifications in the molecular structure of starch in rice grain transformed with P10::AmyI-1, which was found to possess unprecedented structural characteristics.

本研究旨在描述异位过表达α-淀粉酶的水稻胚乳淀粉的特征。用花椰菜花叶病毒 35S 启动子驱动的 AmyI-1(35S::AmyI-1)和 AmyII-4(35S::AmyII-4)以及 10 kDa 脯氨酶启动子驱动的 AmyI-1(P10::AmyI-1)转化的转基因水稻植株在标准条件下(23 °C、12 小时黑暗/26 °C、12 小时光照)栽培,随后收获棕色谷粒。每粒淀粉都显示出特有的粉化现象,而电子显微分析仪(EPMA)-SEM 图像显示淀粉颗粒表面有许多小凹坑,这些凹坑可归因于α-淀粉酶的活性。淀粉链长度分布的荧光标记和毛细管电泳分析显示,与野生型相比,35S::AmyI-1 和 35S::AmyII-4 转基因水稻的淀粉没有明显变化。相反,在 P10::AmyI-1 淀粉中,极短的 α-葡聚糖链(DP 2-8)急剧增加。快速粘度分析仪分析也发现了 P10::AmyI-1 淀粉链长分布的变化,表现为粘度的变化。此外,1H-NMR 分析揭示了用 P10::AmyI-1 转化的稻谷中淀粉分子结构的动态变化,发现它具有前所未有的结构特征。
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引用次数: 0
Molecular Basis of Absorption at 340 nm of 3-Ketoglucosides under Alkaline Conditions. 碱性条件下 3-Ketoglucosides 在 340 纳米波长处吸收的分子基础。
IF 1.1 Pub Date : 2024-04-20 eCollection Date: 2024-01-01 DOI: 10.5458/jag.jag.JAG-2023_0014
Motomitsu Kitaoka, Ayu Takano, Mei Takahashi, Yoshiki Yamakawa, Shinya Fushinobu, Nobuyuki Yoshida

Transient absorption at 340 nm under alkaline conditions has long been used to detect the presence of 3-keto-O-glycosides without understanding the molecular basis of the absorbance. The time course of A340 nm for the alkaline treatment of 3-ketolevoglucosan, an intramolecular 3-keto-O-glycoside, was investigated to identify the three products generated through alkaline treatment. By comparing the spectra of these compounds under neutral and alkaline conditions, we identified 1,5-anhydro-D-erythro-hex-1-en-3-ulose (2-hydroxy-3-keto-D-glucal) as being the compound responsible for the absorption.

长期以来,在碱性条件下 340 纳米波长处的瞬态吸收一直被用来检测 3-酮-O-糖苷的存在,但却不了解吸光度的分子基础。我们研究了分子内 3-酮-O-糖苷在碱性处理 3-ketolevoglucosan 时 A340 nm 波长的时间过程,以确定碱性处理产生的三种产物。通过比较这些化合物在中性和碱性条件下的光谱,我们确定 1,5-anhydro-D-erythro-hex-1-en-3-ulose (2-hydroxy-3-keto-D-glucal) 是导致吸收的化合物。
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引用次数: 0
Water Sorption Isotherm and Critical Water Activity of Amorphous Water-Soluble Carbohydrates Characterized by the Glass Transition Temperature. 以玻璃化转变温度为特征的无定形水溶性碳水化合物的水吸附等温线和临界水活性。
IF 1.1 Pub Date : 2024-04-20 eCollection Date: 2024-01-01 DOI: 10.5458/jag.jag.JAG-2023_0015
Yuichi Kashiwakura, Tomochika Sogabe, Sukritta Anantawittayanon, Takumi Mochizuki, Kiyoshi Kawai

Water-soluble carbohydrates commonly exist in an amorphous state in foods and undergo glass-rubber transition (glass transition) at the glass transition temperature (Tg). The critical water content (Wc) and critical water activity (awc) are the water content and water activity (aw) at which the glass transition occurs at 298 K (typical ambient temperature), respectively. For amorphous water-soluble carbohydrates, Wc can be predicted from the Tg of anhydrous solid (Tgs) using previously reported equations. However, an approach for predicting awc is still lacking. This study aimed to establish an awc-predictive approach for amorphous water-soluble carbohydrates based on Tgs. First, the water sorption isotherms of four hydrogenated starch hydrolysates were investigated, and the results were analyzed using the Guggenheim-Anderson-de Boer (GAB) model. Second, the effect of Tgs on the GAB parameters (C, K, and Wm) was evaluated using the Tgs values reported in previous literatures. C and Wm decreased and increased logarithmically, respectively, with increasing 1/Tgs. K was fixed to 1 (constant), as it showed little variation. These results enabled the prediction of the GAB parameters from Tgs. The GAB model could then predict awc from Wc, which was determined using the previously established equations. The predicted awc values were in good agreement with the experimentally determined awc. Additionally, we demonstrated that this awc-prediction approach is also applicable to amorphous water-soluble electrolytes and partially water-insoluble carbohydrates. Thus, this approach can be used for the quality control of amorphous water-soluble carbohydrates and carbohydrate-based foods.

水溶性碳水化合物通常以无定形状态存在于食品中,并在玻璃转化温度(Tg)下发生玻璃-橡胶转化(玻璃转化)。临界含水量(Wc)和临界水活度(awc)分别是指在 298 K(典型环境温度)时发生玻璃化转变的含水量和水活度(aw)。对于无定形水溶性碳水化合物来说,Wc 可通过无水固体的 Tg(Tgs)使用以前报告过的公式进行预测。然而,目前仍缺乏预测 awc 的方法。本研究旨在建立一种基于 Tgs 的无定形水溶性碳水化合物 awc 预测方法。首先,研究了四种氢化淀粉水解物的水吸附等温线,并使用 Guggenheim-Anderson-de Boer(GAB)模型对结果进行了分析。其次,利用之前文献中报道的 Tgs 值评估了 Tgs 对 GAB 参数(C、K 和 Wm)的影响。随着 1/Tgs 的增加,C 和 Wm 分别呈对数下降和上升趋势。K 被固定为 1(常数),因为它几乎没有变化。这些结果使我们能够根据 Tgs 预测 GAB 参数。然后,GAB 模型可以根据 Wc 预测 awc,而 awc 是通过之前建立的方程确定的。预测的 awc 值与实验测定的 awc 值非常吻合。此外,我们还证明了这种 awc 预测方法也适用于无定形水溶性电解质和部分不溶于水的碳水化合物。因此,这种方法可用于无定形水溶性碳水化合物和以碳水化合物为基础的食品的质量控制。
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引用次数: 0
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Journal of applied glycoscience
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