胶质母细胞瘤多模态相关成像基因组数据的综合分析。

Rolando J Olivares, Arvind Rao, Jeffrey S Morris, Veerabhadran Baladandayuthapani
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引用次数: 2

摘要

我们提出了一种跨多个平台整合具有多种成像结果的高维基因组学数据集的方法。这个新的统计框架使用分层模型来整合跨平台的生物关系,以识别与多种相关成像结果相关的基因。我们的两阶段分层模型使用了跨平台共享的信息,从而提高了识别相关基因的预测能力。我们通过模拟评估我们提出的方法的性能,并应用于从癌症基因组图谱胶质母细胞瘤多形式数据集获得的数据。我们提出的方法发现了与胶质母细胞瘤患者影像学结果相关的多个拷贝数和microRNA调节基因。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Integrative Analysis of Multi-modal Correlated Imaging-Genomics Data in Glioblastoma.

We propose a method to integrate high-dimensional genomics datasets across multiple platforms with multiple imaging outcomes. This new statistical framework uses a hierarchical model to integrate biological relationships across platforms to identify genes that associate with multiple correlated imaging outcomes. Our two-stage hierarchical model uses the information shared across the platforms and thus increasing the predictive power to identify the relevant genes. We assess the performance of our proposed method through simulation and apply to data obtained from the Cancer Genome Atlas Glioblastoma Multiforme dataset. Our proposed method discovers multiple copy number and microRNA regulated genes that are related to patients' imaging outcomes in glioblastoma.

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Integrative Sparse Bayesian Analysis of High-dimensional Multi-platform Genomic Data in Glioblastoma. Integrative Analysis of Multi-modal Correlated Imaging-Genomics Data in Glioblastoma. An Approach for Assessing RNA-seq Quantification Algorithms in Replication Studies. A Bayesian Graphical Model for Integrative Analysis of TCGA Data. Sparse Bayesian Graphical Models for RPPA Time Course Data.
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