苯并噻唑棒状咪唑酮衍生物:合成、分子对接、DFT研究和抗菌研究。

IF 1.5 4区 医学 Q4 CHEMISTRY, MEDICINAL Current computer-aided drug design Pub Date : 2023-01-01 DOI:10.2174/1573409919666221121115556
Nisheeth Desai, Abhay Maheta, Aratiba Jethawa, Iqrar Ahmad, Harun Patel, Bharti Dave
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引用次数: 0

摘要

目的:本研究旨在合成抗菌药物及其分子对接,并对苯并噻唑-咪唑酮类支架进行DFT研究。背景:苯并噻唑和咪唑酮类似物因其潜在的抗微生物感染活性而受到关注。为了寻找合适的抗菌化合物,我们报道了苯并噻唑和咪唑酮类似物的合成、表征和生物活性(4a- 1)。目的:合成并表征苯并噻唑棒状咪唑酮基序,并对其抗菌活性进行筛选。根据获得的生物活性结果,进行了抗菌药物开发的分子对接。方法:采用多步反应法合成了一系列新的苯并噻唑-棒状咪唑酮杂化合物,以寻找抗菌药物(4a- 1)。通过1H NMR, 13C NMR, IR和质谱技术对其结构进行了表征。此外,用连续肉汤稀释法评价合成的化合物的抗菌活性。此外,对抗菌活性最高的化合物之一4c进行了分子静电势、几何优化和分子反应性分析(HOMO-LUMO)。结果:对病原菌进行了体外抑菌活性评价。其中,化合物4c对革兰氏阴性菌、大肠杆菌的生物活性最强,MIC值为50 μg/mL;化合物4c对钉螺的生物活性最强,MIC值为100 μg/mL。采用DFT/B3LYP理论,在6-31G **的碱基集上计算了活性化合物4c的HUMO-LUMO能量、分子静电势分析和几何优化参数,并对结果进行了显示。对大肠杆菌DNA Gyrase B进行分子对接研究,了解化合物4c的结合相互作用,发现化合物4c通过疏水相互作用与活性位点的Arg76氨基酸相互作用。结论:苯并噻唑-棒状咪唑酮复合物(4a-l)具有良好的抗菌活性。其中,化合物4b (MIC=50 μg/mL,白色念珠菌)、4c (MIC=50 μg/mL,大肠杆菌)、4e (MIC= 100 μg/mL,黑曲霉)和4g (MIC=50 μg/mL,化脓性念珠菌)在苯并噻唑-咪唑类杂化合物苯基环对位上具有吸电子的溴、氯、氟基团,与标准药物相比药效显著。利用B3LYP/6-31G **碱基集和ΔE = ELUMO-EHOMO对4c进行几何优化、分子反应性和MESP分析,得到4c的几何优化、分子反应性和MESP分析结果为- 0.12096 eV。此外,结合亲和力评分与体外抗菌活性相关良好(4c),而它们的结合模式表明与活性位点存在空间、静电和氢键相互作用。
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Benzothiazole Clubbed Imidazolone Derivatives: Synthesis, Molecular Docking, DFT Studies, and Antimicrobial Studies.

Aim: This study aims to synthesize antimicrobial agents and their molecular docking, and DFT studies of benzothiazole-imidazolone scaffolds.

Background: Benzothiazole and imidazolone analogues are of interest due to their potential activity against microbial infections. In search of suitable antimicrobial compounds, we report here the synthesis, characterization, and biological activities of benzothiazole and imidazolone analogues (4a-l).

Objective: The benzothiazole clubbed imidazolone motifs were synthesized, characterized, and screened for their antimicrobial activity. Molecular docking was carried out for the development of antimicrobial agents based on the results of biological activity obtained.

Methods: We have synthesized a new series of benzothiazole-clubbed imidazolone hybrids by using multi-step reactions in the search for antimicrobial agents (4a-l). The structures were determined by 1H NMR, 13C NMR, IR, and mass spectroscopy techniques. Moreover, synthesized compounds were evaluated for their antimicrobial activity by using a Serial Broth Dilution method. In addition, molecular electrostatic potential, geometric optimization, and molecular reactivity analyses (HOMO-LUMO) of 4c, which is one of the compounds with the highest antibacterial activity, were performed.

Results: The in vitro antimicrobial activity was evaluated against pathogenic strains. Among them, compounds 4c showed the most potent biological activity against Gram-negative bacteria, E. coli with MIC values of 50 μg/mL, and compound 4c active against A. clavatus with MIC values of 100 μg/mL. Active compound 4c HUMO-LUMO energies, molecular electrostatic potential analysis, and geometric optimization parameters were calculated with a 6-31G ** base set using DFT/B3LYP theory, and the results were displayed. Molecular docking studies were performed on E. coli DNA Gyrase B to understand the binding interaction of compound 4c, and it was observed that compound 4c interacted with Arg76 amino acid of the active site through hydrophobic interaction.

Conclusion: Benzothiazole-clubbed imidazolone hybrids (4a-l) indicated promising antimicrobial activity. Among them, compounds 4b (MIC=50 μg/mL C. albicans), 4c (MIC=50 μg/mL, E. coli), 4e (MIC= 100 μg/mL, A. niger), and 4g (MIC= 50 μg/mL, S. pyogenes) with electronwithdrawing bromo, chloro, and fluoro group at the para position of the phenyl ring on benzothiazole-imidazolone hybrids indicated remarkable potency compared to the standard drug. The geometric optimization, molecular reactivity, and MESP analyses of 4c were calculated with the B3LYP/6-31G ** base set and ΔE = ELUMO-EHOMO, which was found to be - 0.12096 eV. In addition, the binding affinity scores correlated well with the in vitro antimicrobial activity (4c), while their binding modes proposed the involvement of steric, electrostatic, and hydrogen- bonding interactions with the active site.

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来源期刊
Current computer-aided drug design
Current computer-aided drug design 医学-计算机:跨学科应用
CiteScore
3.70
自引率
5.90%
发文量
46
审稿时长
>12 weeks
期刊介绍: Aims & Scope Current Computer-Aided Drug Design aims to publish all the latest developments in drug design based on computational techniques. The field of computer-aided drug design has had extensive impact in the area of drug design. Current Computer-Aided Drug Design is an essential journal for all medicinal chemists who wish to be kept informed and up-to-date with all the latest and important developments in computer-aided methodologies and their applications in drug discovery. Each issue contains a series of timely, in-depth reviews, original research articles and letter articles written by leaders in the field, covering a range of computational techniques for drug design, screening, ADME studies, theoretical chemistry; computational chemistry; computer and molecular graphics; molecular modeling; protein engineering; drug design; expert systems; general structure-property relationships; molecular dynamics; chemical database development and usage etc., providing excellent rationales for drug development.
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