ULK1 在结肠癌中的临床病理意义和潜在功能。

IF 6.5 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Biotechnology & Genetic Engineering Reviews Pub Date : 2024-12-01 Epub Date: 2023-05-16 DOI:10.1080/02648725.2023.2210952
Peng Lv, Zixi Wu, Lin Lai, Yukun Zhang, Bo Pei
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引用次数: 0

摘要

非协调51样激酶1(ULK1)是参与自噬以维持细胞活力和稳态的一个重要环节。本文研究了ULK1在结肠癌(CC)中的表达水平,并分析了其临床病理特征和潜在功能。ULK1 的数据来自公共数据库。UCSC XENA RNAseq数据经Toil程序统一处理。采用 STRING 方法识别共表达基因,并建立相互作用得分超过 0.4 的 PPI 网络。以CC的mRNA数据为基础,通过单样本GSEA(ssGSEA)计算肿瘤浸润的免疫细胞水平。与配对和未配对的正常组织相比,ULK1的表达均呈上调趋势。在淋巴结转移、淋巴管侵犯以及病理分期为3期和4期的CC患者中,ULK1的mRNA表达上调。在ULK1 mRNA表达上调的患者中,疾病特异性生存期(DSS)、无进展间期(PFI)和总生存期(OS)均大幅下降。从功能上看,与ULK1的生物学过程有关的任何变化都可能与大自噬、自噬体组织和自噬体组装有关。作为共表达基因(CEG),ATG101在CC组织中上调,表明存活率低。ULK1 与免疫细胞密切相关。ULK1在CC细胞中表达上调,ULK1的上调可作为准确的预后因素,从而为治疗提供新的干预靶点。
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The clinicopathological significance and potential function of ULK1 in colon cancer.

Uncoordinated 51-like kinase 1 (ULK1) is an essential part involved in autophagy to maintain cell viability and homeostasis. Herein, the expression levels of ULK1 in colon cancer (CC) were investigated, and its clinicopathological features and potential function were analyzed. Data of ULK1 were obtained from a public database. UCSC XENA RNAseq data were uniformly processed by using the Toil process. STRING was employed for identification of co-expression genes and development of PPI networks whose interaction scores exceeded 0.4. The level of immune cells for tumor infiltration was calculated by means of single-sample GSEA (ssGSEA) on the basis of mRNA data of CC. The ULK1 expression was upregulated compared with both paired and unpaired normal tissues. The mRNA expression of ULK1 was upregulated in CC patients with lymph node metastasis, lymphatic invasion, and pathological stages of 3 and 4. The disease-specific survival (DSS), progression-free interval (PFI), and the overall survival (OS) of patients with upregulated mRNA expression of ULK1 were drastically reduced. Functionally, any changes related to the biological process of ULK1 may be related to macroautophagy, autophagosome organization and autophagosome assembly. As a co-expressed gene (CEG), ATG101 was up-regulated in CC tissues and indicated poor survival. ULK1 is closely related to immune cells. ULK1 expression is upregulated in CC cells and upregulation of ULK1 may serve as an accurate prognostic factor, thereby providing novel intervention targets for therapy.

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来源期刊
Biotechnology & Genetic Engineering Reviews
Biotechnology & Genetic Engineering Reviews BIOTECHNOLOGY & APPLIED MICROBIOLOGY-GENETICS & HEREDITY
CiteScore
6.50
自引率
3.10%
发文量
33
期刊介绍: Biotechnology & Genetic Engineering Reviews publishes major invited review articles covering important developments in industrial, agricultural and medical applications of biotechnology.
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