D. Muramatsu, S. Hashimoto, T. Tsunashima, T. Kaburagi, M. Sasaki, Takashi Matsumoto
{"title":"Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems","authors":"D. Muramatsu, S. Hashimoto, T. Tsunashima, T. Kaburagi, M. Sasaki, Takashi Matsumoto","doi":"10.1109/NNSP.2003.1318008","DOIUrl":null,"url":null,"abstract":"A new algorithm is proposed for inferring the number of transmembrane regions of transmembrane proteins from two dimensional vector trajectories consisting of hydropathy index and charge of amino acids by stochastic dynamical system models. The prediction accuracy of a preliminary experiment is 94%. Since no fine-tuning is done, this appears encouraging.","PeriodicalId":315958,"journal":{"name":"2003 IEEE XIII Workshop on Neural Networks for Signal Processing (IEEE Cat. No.03TH8718)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2003 IEEE XIII Workshop on Neural Networks for Signal Processing (IEEE Cat. No.03TH8718)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/NNSP.2003.1318008","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 4
Abstract
A new algorithm is proposed for inferring the number of transmembrane regions of transmembrane proteins from two dimensional vector trajectories consisting of hydropathy index and charge of amino acids by stochastic dynamical system models. The prediction accuracy of a preliminary experiment is 94%. Since no fine-tuning is done, this appears encouraging.
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