High-level expression of codon-optimized Taq DNA polymerase under the control of rhaBAD promoter

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Analytical biochemistry Pub Date : 2024-05-28 DOI:10.1016/j.ab.2024.115581
Fina Amreta Laksmi , Kartika Sari Dewi , Isa Nuryana , Siti Eka Yulianti , Kharisma Panji Ramadhan , Moch Irfan Hadi , Yudhi Nugraha
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Abstract

A DNA polymerase from Thermus aquaticus remains the most popular among DNA polymerases. It was widely applied in various fields involving the application of polymerase chain reaction (PCR), implying the high commercial value of this enzyme. For this reason, an attempt to obtain a high yield of Taq DNA polymerase is continuously conducted. In this study, the l-rhamnose-inducible promoter rhaBAD was utilized due to its ability to produce recombinant protein under tight control in E. coli expression system. Instead of full-length Taq polymerase, an N-terminal deletion of Taq polymerase was selected. To obtain a high-level expression, we attempted to optimize the codon by reducing the rare codon and GC content, and in a second attempt, we optimized the culture conditions for protein expression. The production of Taq polymerase using the optimum culture condition improved the level of expression by up to 3-fold. This approach further proved that a high level of recombinant protein expression could be achieved by yielding a purified Taq polymerase of about 8.5 mg/L of culture. This is the first research publication on the production of Taq polymerase with N-terminal deletion in E. coli with the control of the rhaBAD promoter system.

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在 rhaBAD 启动子控制下高水平表达代码优化的 Taq DNA 聚合酶。
来自水生热菌的 DNA 聚合酶仍然是 DNA 聚合酶中最受欢迎的一种。它被广泛应用于聚合酶链反应(PCR)的各个领域,这意味着这种酶具有很高的商业价值。因此,人们不断尝试获得高产率的 Taq DNA 聚合酶。在本研究中,利用了 L-鼠李糖诱导型启动子 rhaBAD,因为它能在大肠杆菌表达系统中严格控制重组蛋白的产生。我们没有使用全长的 Taq 聚合酶,而是选择了 N 端缺失的 Taq 聚合酶。为了获得高水平的表达,我们尝试通过减少稀有密码子和 GC 含量来优化密码子,并在第二次尝试中优化了蛋白质表达的培养条件。使用最佳培养条件生产的 Taq 聚合酶的表达水平提高了 3 倍。这种方法进一步证明,通过获得纯化的 Taq 聚合酶约 8.5 毫克/升的培养液,可以实现高水平的重组蛋白表达。这是大肠杆菌在 rhaBAD 启动子系统控制下生产 N 端缺失的 Taq 聚合酶的首篇研究论文。
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来源期刊
Analytical biochemistry
Analytical biochemistry 生物-分析化学
CiteScore
5.70
自引率
0.00%
发文量
283
审稿时长
44 days
期刊介绍: The journal''s title Analytical Biochemistry: Methods in the Biological Sciences declares its broad scope: methods for the basic biological sciences that include biochemistry, molecular genetics, cell biology, proteomics, immunology, bioinformatics and wherever the frontiers of research take the field. The emphasis is on methods from the strictly analytical to the more preparative that would include novel approaches to protein purification as well as improvements in cell and organ culture. The actual techniques are equally inclusive ranging from aptamers to zymology. The journal has been particularly active in: -Analytical techniques for biological molecules- Aptamer selection and utilization- Biosensors- Chromatography- Cloning, sequencing and mutagenesis- Electrochemical methods- Electrophoresis- Enzyme characterization methods- Immunological approaches- Mass spectrometry of proteins and nucleic acids- Metabolomics- Nano level techniques- Optical spectroscopy in all its forms. The journal is reluctant to include most drug and strictly clinical studies as there are more suitable publication platforms for these types of papers.
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